genome.fa.s9343.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009343.1 Hibiscus syriacus cultivar Beakdansim tig00113123_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2141224

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1269 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1999276--1999891	81	7.5	82	76	6	584	24	21	24	30	1.99
1999207--1999878	164	4.1	164	89	0	925	23	20	24	30	1.99
2004976--2005034	8	7.2	8	75	16	50	74	0	5	20	1.00
2006208--2006244	16	2.3	16	90	9	58	78	0	0	21	0.75
2006211--2006241	11	2.7	11	95	5	53	80	0	0	19	0.71
2006258--2006523	36	7.2	36	74	13	206	45	7	4	42	1.52
2006258--2006523	38	7.2	36	75	13	206	45	7	4	42	1.52
2006258--2006523	72	3.6	72	79	10	238	45	7	4	42	1.52
2006393--2006417	11	2.3	11	100	0	50	44	8	8	40	1.63
2006429--2006453	12	2.1	12	100	0	50	44	8	8	40	1.63
2006258--2006524	110	2.4	109	80	11	271	45	7	4	42	1.53
2011428--2011506	40	2.0	40	94	0	140	26	22	8	41	1.83
2011948--2011978	2	15.5	2	100	0	62	48	0	0	51	1.00
2013890--2013936	24	1.9	25	86	4	69	29	21	10	38	1.87
2020891--2021002	28	4.0	28	97	0	215	32	15	3	49	1.61
2025588--2025621	16	2.3	14	90	10	50	50	0	11	38	1.39
2029391--2029423	16	2.2	15	89	10	50	63	6	6	24	1.40
2030483--2030527	21	2.1	21	84	8	56	48	26	2	22	1.62
2039269--2039308	4	10.0	4	94	0	71	22	0	27	50	1.50
2049796--2049847	18	3.1	16	75	24	54	63	1	1	32	1.16
2055060--2055179	35	3.3	36	89	5	181	43	20	5	31	1.73
2055111--2055171	21	3.2	21	65	29	64	42	21	4	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2055062--2055206	35	4.1	36	83	11	142	41	19	6	33	1.76
2059246--2059277	16	2.0	16	93	0	55	34	25	6	34	1.81
2059687--2059771	37	2.3	37	84	6	111	42	18	4	34	1.72
2059688--2059757	37	1.9	37	91	2	115	45	17	4	32	1.67
2063597--2063797	7	28.1	7	78	16	191	42	0	4	52	1.28
2063599--2063797	2	106.0	2	70	27	136	42	1	4	52	1.28
2063599--2063799	50	4.0	50	76	18	186	42	0	4	52	1.28
2063599--2063797	38	5.5	37	79	16	170	42	1	4	52	1.28
2063734--2063794	3	20.0	3	79	15	63	37	1	1	59	1.17
2069740--2069811	31	2.3	31	78	7	83	31	16	15	36	1.90
2072998--2073028	11	2.7	11	95	5	53	67	3	0	29	1.06
2074736--2074770	3	11.7	3	87	0	52	25	0	0	74	0.82
2074724--2074772	9	5.3	9	78	11	55	24	0	0	75	0.80
2074724--2074772	15	3.2	15	82	2	62	24	0	0	75	0.80
2079156--2079195	21	2.0	20	85	5	53	17	20	15	47	1.83
2081377--2081433	23	2.4	23	77	8	62	36	10	5	47	1.61
2082120--2082329	106	2.0	107	90	0	332	31	15	11	41	1.83
2083151--2083211	31	2.0	31	90	0	95	32	13	13	40	1.82
2083338--2083395	29	2.0	29	86	6	82	24	17	13	44	1.85
2083408--2083758	134	2.6	134	91	0	551	26	29	19	24	1.98
2083964--2084001	3	12.7	3	100	0	76	31	0	0	68	0.90
2086872--2087118	42	5.8	41	81	6	255	32	23	23	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2086872--2087118	84	2.9	84	84	5	304	32	23	23	19	1.97
2088059--2088114	29	2.0	28	89	3	85	37	21	5	35	1.76
2088067--2088228	29	5.7	29	72	5	114	43	20	6	29	1.76
2088068--2088223	85	1.8	85	84	0	213	44	19	5	30	1.74
2088230--2088278	18	2.7	18	90	0	80	20	22	40	16	1.91
2092863--2092937	30	2.4	30	78	10	80	40	12	1	46	1.49
2103055--2103100	16	2.9	16	93	0	74	34	23	2	39	1.67
2103830--2103882	21	2.5	21	93	0	88	28	28	22	20	1.99
2104078--2104132	13	4.2	13	75	13	58	49	12	3	34	1.59
2104118--2104216	33	3.0	33	94	1	164	45	15	7	32	1.73
2104211--2104250	21	1.9	21	94	0	71	47	7	15	30	1.72
2106581--2106619	13	3.0	13	85	7	53	51	15	15	17	1.77
2117184--2117230	21	2.3	21	85	3	60	34	21	10	34	1.88
2117195--2117239	21	2.1	21	83	0	54	31	20	4	44	1.71
2118390--2118451	23	2.8	23	90	4	101	32	0	1	66	1.02
2121148--2121316	84	2.0	84	98	0	329	28	15	26	29	1.96
2123175--2123214	2	20.0	2	94	0	71	50	2	0	47	1.14
2127987--2128013	13	2.1	13	100	0	54	85	0	0	14	0.61
2129828--2130189	55	6.7	56	87	4	263	27	27	17	28	1.98
2129817--2130291	102	4.5	109	86	6	323	27	27	16	28	1.97
2129881--2130305	51	8.1	51	90	5	548	28	28	16	28	1.97
2131610--2131685	14	5.3	14	78	15	75	9	11	0	78	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2131622--2131762	7	19.6	7	72	18	87	7	13	0	78	0.98
2131610--2131753	15	9.3	15	71	20	93	7	13	0	78	0.99
2131609--2131772	75	2.2	74	79	12	185	7	14	0	77	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!