genome.fa.s9343.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009343.1 Hibiscus syriacus cultivar Beakdansim tig00113123_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2141224

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  5  of  11  ( 1269 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
761122--761169	25	1.9	25	86	0	69	54	0	27	18	1.44
763728--763784	23	2.5	23	76	0	60	22	21	22	33	1.97
764548--764685	69	2.0	69	92	2	233	25	14	22	37	1.92
764757--764787	1	31.0	1	93	0	53	3	0	0	96	0.21
767881--767918	15	2.6	15	87	4	51	73	5	10	10	1.23
767975--768019	4	10.8	4	82	17	56	75	2	2	20	1.01
767908--768019	33	3.5	31	73	17	86	71	4	5	18	1.23
767974--768050	9	8.7	9	69	11	52	70	5	5	19	1.26
768381--768419	14	2.7	15	88	4	53	71	0	0	28	0.86
774987--775012	13	2.0	13	100	0	52	30	15	15	38	1.88
777058--777180	42	2.9	43	87	2	176	24	26	11	38	1.89
780143--780308	51	3.3	51	81	3	156	60	10	11	17	1.59
782375--782443	36	1.9	36	87	0	102	37	11	17	33	1.86
782375--782452	36	2.1	36	83	2	93	39	11	17	30	1.86
782295--782527	102	2.3	103	78	6	249	37	12	20	30	1.88
782471--782629	66	2.4	67	87	1	212	37	14	20	27	1.92
782505--782615	30	3.5	30	67	17	89	38	14	18	28	1.90
786699--787033	169	2.0	168	99	0	661	23	22	23	30	1.99
798168--798196	2	14.5	2	100	0	58	51	0	0	48	1.00
798272--798334	23	3.0	20	71	15	54	52	0	3	44	1.17
799694--799719	11	2.4	11	100	0	52	30	0	0	69	0.89
813172--813269	24	4.0	25	86	2	101	24	25	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
813206--813274	24	2.9	24	89	2	113	26	26	20	27	1.99
819480--819534	20	2.8	20	71	0	56	38	10	20	30	1.87
820000--820051	15	3.5	15	72	0	50	30	7	23	38	1.83
820153--820231	24	3.3	24	89	3	115	22	21	22	32	1.98
821486--821556	27	2.6	27	73	4	72	45	14	9	30	1.77
823949--824051	30	3.4	30	84	0	143	33	21	20	24	1.97
823951--824068	60	2.0	60	82	0	146	35	21	21	22	1.96
825153--825229	20	3.7	20	79	14	75	24	24	23	27	2.00
825198--825358	64	2.5	63	80	5	180	24	24	19	31	1.98
828762--828864	30	3.4	30	89	0	161	33	24	17	24	1.96
837236--837275	21	1.9	21	89	0	62	25	40	25	10	1.86
839224--839259	17	2.1	17	89	0	54	13	0	22	63	1.29
846729--846771	21	2.0	21	86	9	59	62	9	13	13	1.53
855882--855948	22	3.2	22	91	8	106	35	0	0	64	0.94
855992--856046	24	2.2	24	81	15	60	34	0	0	65	0.93
856113--856155	21	2.0	20	82	8	50	58	4	2	34	1.32
857135--857195	29	2.1	28	81	6	68	40	3	0	55	1.16
857551--857580	2	15.0	2	100	0	60	50	0	0	50	1.00
858810--858869	31	1.9	31	93	0	102	40	6	10	43	1.64
859360--859403	20	2.3	19	84	4	52	54	2	2	40	1.25
859383--859446	24	2.5	26	85	10	87	53	1	0	45	1.10
859383--859446	27	2.5	25	82	14	78	53	1	0	45	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
859410--859483	40	1.9	36	84	10	94	55	1	0	43	1.08
859382--859536	64	2.5	64	91	4	246	56	1	1	40	1.19
859498--859548	12	4.3	12	76	18	54	66	1	0	31	1.03
860681--860723	17	2.4	18	80	7	52	20	20	2	55	1.54
860996--861049	24	2.3	23	87	3	72	35	16	20	27	1.94
861004--861056	23	2.2	24	83	3	63	37	15	20	26	1.92
861850--861885	17	2.1	17	89	0	54	33	11	2	52	1.51
870528--870583	15	3.7	15	90	2	76	58	10	21	8	1.58
874455--874537	39	2.1	40	84	10	109	54	7	34	3	1.46
876896--876920	2	12.5	2	100	0	50	52	0	0	48	1.00
876968--877190	85	2.6	85	86	4	290	32	17	21	29	1.95
877168--877213	13	3.5	13	84	0	65	28	19	21	30	1.98
877162--877213	26	2.0	26	84	0	68	32	17	21	28	1.96
878227--878259	16	2.0	17	88	5	50	39	0	24	36	1.56
878293--878572	83	3.4	83	81	1	330	33	16	19	30	1.94
879450--879501	26	2.0	26	84	3	68	55	21	3	19	1.58
879828--879870	21	2.0	21	81	0	50	13	44	2	39	1.57
889969--889996	3	9.3	3	100	0	56	0	0	67	32	0.91
900530--900574	18	2.5	18	85	0	63	22	24	13	40	1.90
901138--901225	18	4.7	18	76	14	88	34	6	28	30	1.83
901154--901231	23	3.6	23	72	19	78	33	7	28	30	1.85
901138--901231	41	2.3	41	90	7	147	34	7	27	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
903857--903916	19	3.1	19	83	7	84	33	15	21	30	1.94
905135--905183	19	2.7	17	84	9	53	26	20	28	24	1.99
905155--905314	65	2.5	65	83	9	177	27	20	22	30	1.98
913773--913979	65	3.2	64	79	12	210	26	19	23	30	1.98
915060--915094	18	1.9	18	88	0	52	28	34	17	20	1.95
915115--915164	24	2.1	24	96	0	91	32	24	8	36	1.84
925249--925314	3	22.3	3	96	3	125	31	0	0	68	0.90
926502--926582	35	2.3	36	89	6	121	41	22	1	34	1.62
926522--926598	36	2.2	35	85	2	100	42	28	1	27	1.63
927077--927365	144	2.0	146	87	4	422	47	9	6	36	1.64
927539--927615	35	2.2	35	86	4	102	31	1	22	45	1.60
927990--928044	28	1.9	28	85	3	74	40	5	3	50	1.43
931060--931166	23	4.7	23	76	0	106	24	19	19	36	1.95
931044--931166	46	2.7	46	81	1	129	23	20	18	37	1.94
931565--931671	38	2.5	44	78	18	145	53	11	13	22	1.71
931598--931661	22	3.2	22	62	32	52	56	12	12	18	1.67
932873--932936	22	3.2	22	64	25	59	43	15	14	26	1.85
946255--946305	17	3.4	14	78	21	59	60	0	0	39	0.97
946273--946300	14	2.0	14	100	0	56	64	0	0	35	0.94
946444--946482	3	13.0	3	100	0	78	33	0	0	66	0.92
951298--951486	87	2.2	87	91	0	306	33	6	24	34	1.81
951385--951422	20	1.9	20	100	0	76	42	10	23	23	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
951385--951428	20	2.3	19	92	7	72	43	9	25	22	1.82
951390--951435	20	2.6	16	86	13	56	43	10	21	23	1.84
952399--952445	22	2.1	22	96	0	85	40	14	19	25	1.90
953092--953143	21	2.5	21	100	0	104	28	25	23	23	1.99
953242--953288	19	2.5	19	85	0	58	40	14	8	36	1.77
953353--953412	29	2.0	31	90	6	97	41	16	6	35	1.75
955338--955377	21	2.0	20	85	9	55	50	0	5	45	1.23
956821--956862	14	3.1	14	86	3	50	26	38	0	35	1.57
961478--961510	15	2.1	16	88	5	50	15	24	3	57	1.52
963491--963788	148	2.0	149	97	2	564	24	24	19	32	1.98
966151--966191	21	2.0	21	85	0	55	60	0	2	36	1.10
975338--975395	16	3.6	16	95	0	98	27	32	15	24	1.95
975709--975769	27	2.3	26	88	5	88	37	1	1	59	1.17
975789--975962	30	5.9	30	73	10	142	54	1	5	39	1.30
975789--975920	57	2.2	61	81	9	166	55	0	6	37	1.32
977034--977083	23	2.2	22	86	10	66	60	0	8	32	1.26
977893--977930	19	1.9	19	89	5	58	39	7	0	52	1.31
980968--981064	34	2.9	32	74	10	86	19	3	9	68	1.31
982333--982366	15	2.3	15	100	0	68	44	14	14	26	1.84
985270--985333	29	2.3	29	84	7	80	60	3	4	31	1.32
987208--987756	112	5.0	111	82	8	655	29	18	15	36	1.92
987208--987757	224	2.5	221	87	6	746	29	18	15	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
992823--992847	9	2.8	9	100	0	50	16	0	0	84	0.63
993125--993175	2	26.0	2	96	4	95	50	0	0	49	1.00
997534--997593	24	2.5	24	91	5	86	65	5	0	30	1.14
997543--997593	24	2.1	24	100	0	102	64	3	0	31	1.11
999967--1000026	3	20.0	3	83	6	77	65	0	1	33	1.03
1000949--1000988	21	1.9	21	89	0	62	25	35	32	7	1.84
1000948--1000995	21	2.3	20	82	10	60	25	35	29	10	1.89
1004960--1004990	3	10.3	3	100	0	62	32	0	0	67	0.91
1006316--1006345	15	2.0	15	100	0	60	6	20	6	66	1.38
1008175--1008218	12	3.6	12	80	17	54	45	18	18	18	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11