genome.fa.s9343.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009343.1 Hibiscus syriacus cultivar Beakdansim tig00113123_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2141224

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  4  of  11  ( 1269 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
607323--607460	71	1.9	71	86	2	197	21	19	17	41	1.90
611610--611648	3	13.3	3	83	5	53	61	0	0	38	0.96
611614--611650	17	2.2	17	90	0	56	59	0	0	40	0.97
612299--612348	23	2.2	23	92	0	82	8	24	18	50	1.73
612306--612355	23	2.2	23	85	0	64	8	26	18	48	1.75
615504--615560	22	2.6	22	85	0	78	22	40	17	19	1.91
615923--616009	20	4.4	20	88	4	115	11	16	22	49	1.77
617517--617566	21	2.4	21	79	0	55	22	16	32	30	1.95
617724--617773	18	2.8	18	96	0	91	32	20	8	40	1.81
617845--617879	11	3.3	11	96	4	63	0	5	28	65	1.15
617932--617979	20	2.4	20	85	0	60	33	22	20	22	1.97
618022--618117	20	4.8	20	94	0	165	17	19	26	36	1.94
620103--620163	15	4.3	14	73	10	52	39	0	13	47	1.42
620262--620315	20	2.7	20	85	0	72	44	25	18	11	1.83
620309--620351	20	2.2	20	83	4	52	27	20	23	27	1.99
620358--620662	20	15.9	20	80	10	309	26	17	22	33	1.96
620318--620662	40	9.1	40	78	13	284	25	17	22	34	1.96
620379--620654	54	4.9	54	80	8	252	25	17	23	33	1.96
620963--620997	18	1.9	18	94	0	61	17	2	25	54	1.57
623019--623055	14	2.6	14	91	4	56	5	21	21	51	1.68
623245--623298	24	2.2	24	90	0	81	42	20	16	20	1.89
624071--624156	20	4.3	20	95	0	136	27	23	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624071--624181	20	5.6	20	89	4	134	27	22	22	27	1.99
627904--628002	40	2.5	40	83	3	119	30	16	16	37	1.90
631067--631139	30	2.3	31	83	11	94	23	9	27	39	1.85
631066--631241	32	5.3	33	70	13	121	22	9	28	39	1.85
631164--631243	33	2.5	31	82	7	108	23	8	32	35	1.86
631238--631378	39	3.9	37	83	11	168	15	9	31	43	1.78
632363--632419	20	2.8	20	89	5	80	22	5	19	52	1.66
632555--632615	31	1.9	32	83	9	81	40	21	14	22	1.90
633299--633646	180	1.9	182	86	5	501	46	5	12	35	1.65
633485--634176	290	2.4	289	82	5	796	46	6	13	34	1.68
634423--634486	33	2.0	31	84	6	83	42	20	3	34	1.68
634349--634486	31	4.3	31	72	7	105	39	23	1	35	1.64
634928--634965	14	2.7	14	88	8	51	23	5	15	55	1.61
641431--641639	65	3.2	63	81	9	210	32	22	15	28	1.95
641478--641641	65	2.5	66	92	4	264	31	23	15	29	1.95
641478--641658	64	2.8	64	88	6	233	31	23	16	28	1.96
648030--648054	11	2.3	11	100	0	50	44	8	8	40	1.63
650216--650399	64	2.9	64	86	5	246	32	23	15	28	1.95
651465--652055	65	9.0	65	89	0	849	28	16	14	40	1.88
651481--652056	36	17.5	34	62	20	152	28	17	14	40	1.88
652376--652414	3	13.0	3	100	0	78	33	0	0	66	0.92
659878--660452	36	17.5	35	66	18	171	28	16	14	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
659862--660451	65	9.0	66	91	0	866	28	16	14	40	1.88
660044--660217	29	5.5	29	68	17	114	28	15	14	41	1.87
660761--660823	3	21.0	3	96	0	81	41	0	0	58	0.98
666822--666883	28	2.2	28	94	2	108	40	19	20	19	1.92
667487--667523	19	1.9	19	88	0	56	54	5	0	40	1.24
679538--679613	24	3.2	24	80	0	98	27	17	18	36	1.93
679519--679631	48	2.4	48	75	0	127	24	14	18	42	1.87
679538--679623	24	3.6	24	80	0	73	27	16	18	37	1.92
681668--681724	28	2.0	28	100	0	114	29	28	24	17	1.97
683445--683527	24	3.5	24	84	0	112	27	19	18	34	1.95
683446--683537	48	1.9	48	88	0	139	27	17	18	36	1.93
683445--683537	24	3.9	24	82	0	96	26	17	18	37	1.93
686390--686464	24	3.2	24	80	3	98	28	16	18	37	1.92
686371--686471	24	4.2	24	77	7	89	25	15	18	39	1.91
686661--686685	13	1.9	13	100	0	50	48	0	4	48	1.20
687112--687149	19	2.1	18	90	9	60	42	0	5	52	1.24
690829--690911	24	3.5	24	85	4	98	27	14	19	38	1.90
690845--690916	23	3.1	23	85	2	90	25	16	19	38	1.92
702540--702581	22	2.0	21	86	13	59	64	4	0	30	1.14
706442--706697	45	5.7	46	69	15	167	23	20	14	41	1.90
706366--706714	89	3.9	89	87	2	459	23	19	15	41	1.89
706385--706714	177	1.9	178	86	2	475	23	18	15	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
707541--707650	57	1.9	56	94	1	193	30	25	8	35	1.85
724316--724399	20	4.2	20	87	3	114	21	16	21	40	1.91
724318--724399	41	2.0	41	87	0	119	20	15	21	41	1.90
724440--724695	139	1.8	140	82	5	331	36	16	19	26	1.93
724694--724724	12	2.6	12	89	0	53	58	16	25	0	1.38
726413--726460	18	2.7	18	90	0	69	37	0	0	62	0.95
727115--727181	35	1.9	35	82	8	84	23	10	2	62	1.41
728300--728336	15	2.3	17	86	9	51	72	8	10	8	1.27
730523--730954	75	5.9	75	75	12	344	37	4	3	54	1.36
730523--730886	148	2.4	149	80	6	409	36	5	3	54	1.38
731605--731694	25	3.9	23	72	19	62	41	1	2	55	1.19
732943--733000	6	9.7	6	85	7	64	77	0	5	17	0.94
732949--733008	6	11.0	5	81	13	50	76	1	5	16	1.04
733601--733676	33	2.3	31	82	12	98	30	11	19	38	1.88
733735--733788	4	14.8	4	88	11	57	74	0	0	25	0.83
733804--734133	164	2.0	165	99	0	653	29	18	20	32	1.96
734334--734556	83	2.7	83	81	3	216	26	15	26	31	1.95
734563--734622	29	2.1	29	90	0	93	33	10	13	43	1.77
734749--734861	36	3.1	37	90	3	183	38	13	21	26	1.90
736078--736167	32	2.8	32	87	0	126	36	21	12	30	1.90
736078--736179	32	3.2	32	81	5	116	36	22	12	28	1.91
736272--736333	34	1.9	33	83	9	83	16	6	33	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
736857--736994	69	2.0	69	89	0	213	26	13	20	39	1.90
740125--740202	28	2.8	28	78	14	81	74	5	3	16	1.15
740154--740234	17	4.7	17	76	22	71	77	3	1	17	0.97
740166--740230	5	12.4	5	76	20	62	78	3	1	16	0.96
740181--740237	6	9.3	6	79	12	55	78	1	1	17	0.91
740165--740237	22	3.4	21	78	17	71	78	2	1	17	0.95
740111--740230	17	6.4	18	72	19	63	74	5	4	16	1.16
740807--740883	33	2.3	33	88	0	109	32	12	16	37	1.87
740942--741002	3	21.3	3	75	21	60	70	0	0	29	0.88
747605--747646	21	2.0	21	81	9	50	35	28	9	26	1.88
748344--748372	14	2.0	15	93	6	51	68	0	0	31	0.89
750945--750973	12	2.4	12	100	0	58	17	6	41	34	1.76
751299--751360	23	2.6	24	82	14	76	72	4	4	17	1.20
751295--751367	9	8.1	9	73	10	53	72	4	4	19	1.17
751703--751741	14	2.7	15	88	4	53	71	0	0	28	0.86
752554--752800	84	2.9	84	79	1	280	25	21	23	30	1.99
752873--752973	36	2.9	34	84	5	130	43	16	20	18	1.88
752884--752973	34	2.6	36	85	3	121	44	17	20	17	1.87
752998--753054	30	1.9	30	82	13	73	36	12	12	38	1.80
753042--753227	37	5.3	36	67	14	102	38	14	18	28	1.90
753026--753266	102	2.4	102	94	0	419	36	13	17	32	1.89
753418--753968	36	15.8	37	70	15	191	40	13	19	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
753439--753692	65	3.8	65	75	9	231	42	12	17	27	1.86
753171--753546	166	2.3	166	89	0	581	41	11	17	29	1.85
753504--754069	36	16.1	36	74	12	426	39	13	19	26	1.89
753068--753597	268	2.0	268	82	3	656	40	12	17	29	1.87
753409--753771	138	2.6	137	86	3	503	42	13	18	26	1.87
753504--754069	174	3.2	175	93	1	940	39	13	19	26	1.89
753683--753935	138	1.8	138	87	1	373	38	13	20	26	1.90
753819--754069	73	3.5	72	75	13	241	38	13	20	26	1.91
754847--754949	32	3.3	31	86	2	125	35	20	12	31	1.90
758260--758327	23	3.0	23	84	0	91	19	27	22	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11