genome.fa.s9387.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009387.1 Hibiscus syriacus cultivar Beakdansim tig00113279_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  929501

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5417--5471	28	2.0	28	82	7	67	74	9	14	1	1.14
5441--5491	16	3.2	16	83	13	61	74	9	13	1	1.15
6100--6154	22	2.5	22	96	0	101	38	25	12	23	1.90
6902--7015	36	3.1	36	67	9	97	26	16	15	41	1.89
7115--7209	37	2.6	37	89	0	154	16	22	17	43	1.88
7500--7994	106	4.7	106	87	4	725	35	24	18	21	1.95
7504--7994	206	2.3	213	88	3	721	36	23	18	21	1.95
21777--21835	28	2.1	28	93	0	100	32	13	16	37	1.88
24173--24214	21	2.0	21	90	0	66	26	21	28	23	1.99
24243--24282	20	1.9	22	90	10	66	37	40	10	12	1.77
26059--26108	19	2.6	19	100	0	100	40	4	20	36	1.71
27560--27601	21	2.0	21	90	0	66	23	19	26	30	1.98
27630--27669	20	1.9	22	90	10	66	37	40	10	12	1.77
28983--29012	2	15.0	2	100	0	60	50	0	0	50	1.00
30501--30558	20	2.8	20	81	5	71	25	22	15	36	1.94
30504--30574	20	3.5	20	77	7	70	26	25	15	32	1.95
30504--30599	42	2.3	42	83	3	113	26	21	15	36	1.93
31133--31161	15	1.9	15	100	0	58	31	6	6	55	1.53
32079--32141	18	3.6	18	89	4	94	19	46	20	14	1.84
32073--32141	17	3.9	18	86	3	88	20	44	20	14	1.86
32073--32141	35	2.0	35	88	5	104	20	44	20	14	1.86
32144--32308	29	5.6	29	75	7	143	26	7	24	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39425--39509	17	5.1	17	91	7	138	17	44	25	11	1.83
39518--39627	29	3.8	29	87	0	157	24	8	24	42	1.81
39518--39644	58	2.2	58	91	0	200	23	7	26	41	1.82
39518--39650	29	4.6	29	84	0	149	24	7	25	42	1.81
39545--39670	29	4.3	29	81	0	108	27	6	25	40	1.80
49627--49662	16	2.3	16	90	4	56	61	2	5	30	1.33
50272--50311	2	20.0	2	100	0	80	50	0	0	50	1.00
51971--52027	3	18.7	3	81	3	69	63	0	3	33	1.12
52421--52733	126	2.4	126	90	3	466	25	20	25	29	1.99
52697--52809	40	2.8	40	80	9	129	21	22	35	21	1.96
52435--52788	126	2.7	131	86	4	407	24	20	27	28	1.99
52898--53014	35	3.5	32	70	13	85	40	11	18	29	1.85
53253--53486	66	3.6	66	71	12	187	41	11	14	32	1.82
53642--53729	32	2.8	32	85	0	122	28	22	18	30	1.97
57170--57209	21	1.9	22	90	10	66	12	10	40	37	1.77
57237--57279	21	2.0	21	100	0	86	30	27	18	23	1.98
57478--57537	29	2.0	31	93	6	106	43	16	6	33	1.74
58325--58372	21	2.3	21	100	0	96	60	18	8	12	1.57
58737--58787	15	3.6	14	74	15	52	52	11	19	15	1.73
58731--58800	27	2.6	27	93	0	122	51	12	20	15	1.76
58751--58799	12	3.8	12	77	15	53	48	12	22	16	1.79
61272--61315	2	22.0	2	100	0	88	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62955--63014	3	19.7	3	82	3	75	63	0	3	33	1.11
69859--69957	29	3.2	29	65	15	81	41	11	8	39	1.70
69859--70049	64	3.0	64	92	1	330	42	10	9	37	1.72
76068--76100	5	6.6	5	100	0	66	39	0	0	60	0.97
77084--77119	11	3.4	11	96	3	65	58	8	25	8	1.55
81580--81636	3	19.0	3	85	0	51	57	0	0	42	0.98
81585--81634	18	2.8	18	84	0	73	56	0	0	44	0.99
81853--81912	17	3.4	17	65	17	50	18	21	10	50	1.76
81989--82033	22	2.0	22	83	12	56	15	26	6	51	1.68
81977--82542	113	4.9	112	82	5	577	28	18	13	38	1.89
81977--82525	226	2.4	227	86	5	716	28	19	13	39	1.89
82899--82977	22	3.6	22	91	0	122	36	13	15	34	1.87
84226--84397	76	2.3	76	86	3	231	32	22	15	30	1.94
87581--87716	72	1.9	73	87	4	204	36	18	19	25	1.95
90196--90234	21	1.9	20	84	5	51	56	2	15	25	1.52
91677--91734	26	2.3	25	85	5	80	58	1	3	36	1.25
91685--91740	26	2.2	26	83	0	67	62	3	1	32	1.23
92241--92277	2	18.5	2	94	0	65	48	0	2	48	1.15
98547--98616	21	3.2	21	73	11	61	22	38	21	17	1.93
102443--102474	2	16.5	2	93	6	57	50	0	0	50	1.00
103773--103829	3	19.0	3	81	0	60	59	0	0	40	0.97
104023--104066	21	2.1	21	86	0	61	9	36	15	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105233--105296	30	2.2	29	80	2	74	37	9	23	29	1.86
105965--106005	22	1.9	21	85	5	55	36	4	12	46	1.63
106151--106279	59	2.2	59	87	0	177	27	18	25	27	1.98
106432--106505	22	3.3	22	68	20	71	48	9	14	27	1.75
106454--106529	24	3.2	24	68	20	70	51	6	14	27	1.67
106388--106655	46	6.0	45	91	2	378	43	7	19	30	1.78
106994--107033	20	2.0	20	90	9	64	30	17	22	30	1.97
107025--107084	21	2.9	21	97	0	111	23	21	28	26	1.99
107136--107188	22	2.4	22	80	0	70	16	22	15	45	1.85
108234--108295	28	2.2	28	100	0	124	29	27	17	25	1.98
114575--114608	2	17.0	2	100	0	68	50	0	0	50	1.00
115435--115683	129	2.0	126	86	3	347	49	18	14	17	1.80
116039--116268	39	6.2	40	78	18	194	45	3	6	44	1.47
116127--116191	30	2.2	30	94	2	114	46	4	6	43	1.49
116080--116268	40	5.2	36	75	20	155	45	3	6	44	1.47
116087--116268	70	2.5	71	84	11	214	45	3	6	44	1.48
116049--116304	109	2.4	106	83	8	313	45	4	5	44	1.47
116231--116295	29	2.3	28	81	5	76	46	6	3	44	1.44
116353--116432	5	16.2	5	82	12	87	23	1	0	75	0.88
116357--116421	13	4.9	13	80	16	80	24	0	0	75	0.81
116353--116425	9	8.4	9	75	23	52	24	0	0	75	0.81
116356--116431	39	2.0	38	89	7	118	23	1	0	75	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117440--117478	6	6.2	6	82	11	51	15	0	0	84	0.62
117448--117479	15	2.2	15	94	5	57	12	0	0	87	0.54
122486--123379	81	10.9	80	82	4	933	29	26	20	23	1.99
122486--123381	164	5.5	161	85	5	974	29	26	20	23	1.99
123752--123868	45	2.6	45	87	4	157	42	5	5	47	1.48
123863--123927	30	2.2	30	94	2	114	46	4	6	43	1.49
123820--124002	68	2.6	68	84	12	210	44	3	6	44	1.48
123891--124002	38	3.0	37	86	6	163	45	3	5	45	1.43
123814--124038	104	2.1	106	84	9	291	45	4	5	44	1.46
123965--124029	29	2.3	28	81	5	76	46	6	3	44	1.44
123856--124092	104	2.3	103	80	12	256	43	3	5	47	1.45
124087--124167	5	16.2	5	82	12	96	23	1	0	75	0.88
124087--124160	9	8.8	9	78	20	56	24	0	0	75	0.80
124090--124157	19	3.8	17	81	14	75	23	0	0	76	0.79
124087--124166	40	2.0	39	90	7	126	23	1	0	75	0.88
125282--125322	7	5.7	7	83	16	57	12	0	0	87	0.53
125282--125322	14	2.9	14	92	3	64	12	0	0	87	0.53
125282--125315	8	4.4	8	96	3	61	11	0	0	88	0.52
125775--125830	17	3.3	17	97	0	103	35	23	5	35	1.78
126858--126912	22	2.5	21	80	8	65	20	1	38	40	1.63
127521--127567	2	23.5	2	100	0	94	51	0	0	48	1.00
134940--134966	6	4.5	6	100	0	54	18	18	33	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143044--143082	18	2.2	17	95	4	69	25	35	20	17	1.95
143126--143182	21	2.7	21	77	0	60	36	24	15	22	1.94
149666--149705	20	2.0	21	85	14	57	42	5	7	45	1.54
149935--149973	19	2.1	19	85	0	51	23	30	12	33	1.92
149957--150061	45	2.3	46	91	1	167	30	20	17	31	1.96
157453--157496	21	2.1	21	86	0	61	9	34	15	40	1.79
158295--158334	20	2.0	21	85	14	57	42	5	7	45	1.54
158567--158603	19	1.9	19	88	0	56	24	32	13	29	1.93
158553--158713	65	2.5	64	83	3	189	32	24	14	27	1.95
167923--168007	24	3.6	23	80	6	71	18	14	17	49	1.80

Tables:   1   2   3   4   5