genome.fa.s9387.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009387.1 Hibiscus syriacus cultivar Beakdansim tig00113279_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  929501

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
637418--638033	130	4.7	128	81	3	631	31	16	20	32	1.94
637418--638033	262	2.4	262	83	3	731	31	16	20	32	1.94
639346--639399	13	4.7	12	86	9	69	7	14	0	77	0.97
639320--639348	5	5.8	5	100	0	58	17	0	0	82	0.66
651713--651775	23	2.7	23	80	0	72	19	25	25	30	1.98
652600--652626	14	1.9	14	100	0	54	29	25	7	37	1.83
653082--653351	109	2.5	110	83	6	307	47	16	15	21	1.83
654194--654231	20	1.9	20	94	0	67	73	0	0	26	0.83
654997--655021	13	1.9	13	100	0	50	48	20	24	8	1.76
658018--658150	67	2.0	66	97	2	250	45	14	16	24	1.84
659100--659145	18	2.6	18	82	0	56	15	21	39	23	1.92
659116--659150	18	1.9	18	88	0	52	14	20	42	22	1.88
665746--665770	8	3.1	8	100	0	50	12	0	0	88	0.53
665776--665845	29	2.4	29	82	0	86	48	15	1	34	1.54
677222--677273	15	3.4	16	78	7	63	48	1	0	50	1.12
679049--679085	19	1.9	19	100	0	74	10	16	5	67	1.38
679722--679783	9	7.0	9	78	7	56	82	1	3	12	0.87
679697--679805	23	5.0	21	76	11	96	77	0	4	17	1.00
679723--679803	35	2.2	38	82	6	105	80	1	3	14	0.92
679697--679798	13	8.2	12	73	14	73	77	0	4	16	1.00
680022--680122	41	2.5	41	98	0	193	18	20	22	37	1.94
680050--680183	61	2.2	61	97	0	250	16	20	23	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
680111--680227	41	2.9	41	92	2	191	17	17	23	40	1.91
680025--680224	102	2.0	102	95	0	364	19	19	23	39	1.93
680050--680204	61	2.5	61	90	3	186	18	19	23	38	1.93
680216--680287	22	3.4	22	71	11	78	19	18	23	38	1.93
680216--680309	41	2.3	41	94	0	170	20	18	22	39	1.92
680113--680268	82	1.9	80	83	12	201	18	17	23	40	1.91
680239--680306	19	3.4	19	67	11	55	20	17	20	41	1.91
680028--680246	102	2.1	102	90	3	323	18	18	23	38	1.93
681032--681165	41	3.3	41	97	0	250	40	22	17	20	1.91
681035--681143	19	5.4	19	67	12	74	41	21	17	20	1.91
681054--681166	22	5.4	22	70	12	103	39	23	17	19	1.92
681155--681231	21	3.7	21	78	3	102	33	27	18	20	1.96
681158--681235	41	1.9	41	100	0	156	34	25	19	20	1.96
681035--681206	82	2.1	81	82	6	204	39	22	18	19	1.92
681963--682071	37	2.9	37	95	2	193	31	13	14	40	1.85
682660--682738	35	2.4	34	89	6	117	31	10	17	40	1.83
682793--683081	36	8.1	36	78	13	287	39	14	19	26	1.90
682793--683081	73	4.1	73	76	14	298	39	14	19	26	1.90
682832--683081	138	1.8	138	87	6	373	40	14	18	26	1.89
682742--683108	174	2.1	176	86	5	521	40	14	19	26	1.89
682985--683136	36	4.2	37	82	4	130	40	16	17	25	1.90
683319--683831	110	4.7	110	88	0	701	27	15	22	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
684018--684105	32	2.8	32	85	3	115	34	22	14	28	1.94
685172--685228	14	4.2	13	76	14	53	1	17	3	77	1.00
688265--688309	19	2.4	18	78	7	54	73	0	4	22	1.01
688262--688389	12	11.2	11	67	23	52	75	0	6	17	1.06
688355--688379	10	2.5	10	100	0	50	84	0	0	16	0.63
688345--688388	9	5.0	8	84	15	52	79	0	2	18	0.83
688396--688442	19	2.6	18	80	12	51	74	2	2	21	1.03
688442--688553	42	2.7	40	74	18	70	64	3	1	30	1.21
688400--688517	44	2.6	46	75	14	129	67	2	1	27	1.13
688417--688557	38	3.8	35	73	17	108	65	2	2	29	1.19
688434--688553	40	3.0	40	73	11	104	65	3	1	30	1.19
688433--688536	39	2.6	39	80	8	120	63	2	1	31	1.20
689085--689196	37	3.0	37	93	0	188	32	14	13	40	1.84
694341--694365	12	2.1	12	100	0	50	24	32	16	28	1.96
695177--695227	16	3.2	16	94	0	84	31	13	3	50	1.60
700782--700818	19	2.0	18	94	5	65	21	27	24	27	1.99
711708--711767	29	2.0	30	81	15	72	30	25	10	35	1.88
715292--715339	24	2.0	24	100	0	96	37	20	12	29	1.90
718360--718421	30	2.1	30	84	3	81	41	9	3	45	1.53
718641--718670	15	2.0	15	93	0	51	56	0	3	40	1.16
722238--722280	17	2.4	18	88	7	61	11	4	6	76	1.13
727459--727515	25	2.3	25	96	0	105	35	14	21	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
730383--730457	31	2.4	31	86	4	96	44	9	2	44	1.50
733051--733127	37	2.1	36	81	11	86	58	3	5	32	1.38
735393--735447	25	2.2	25	93	0	92	18	49	7	25	1.73
735821--735861	17	2.3	18	87	4	57	17	29	26	26	1.97
735821--735869	18	2.8	17	87	3	62	16	26	26	30	1.97
738728--738789	30	2.1	30	100	0	124	11	32	24	32	1.90
738693--738922	74	2.9	77	80	12	259	15	27	23	33	1.95
738758--739064	44	7.0	44	85	5	399	17	26	22	32	1.97
738758--739064	89	3.5	89	85	7	405	17	26	22	32	1.97
738758--739064	133	2.3	131	86	5	406	17	26	22	32	1.97
739894--739921	13	2.2	13	100	0	56	21	25	21	32	1.98
742429--742479	22	2.3	22	93	0	84	33	7	11	47	1.69
744719--744796	20	3.8	21	77	5	79	34	29	15	20	1.93
744756--744795	21	1.9	21	100	0	80	30	30	15	25	1.95
744780--744878	40	2.5	41	85	3	130	43	20	18	18	1.88
744785--744879	20	4.8	20	76	5	102	42	20	18	18	1.90
744999--745049	22	2.3	22	86	0	75	19	43	21	15	1.88
745430--745478	20	2.6	18	84	12	62	18	16	18	46	1.84
747580--747675	21	4.6	21	77	5	95	22	34	20	21	1.97
747582--747675	42	2.2	42	86	3	127	22	35	21	21	1.96
749026--749133	27	3.7	27	69	17	90	28	0	19	50	1.53
749017--749183	62	2.6	64	92	2	266	25	2	17	54	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
749949--749995	18	2.6	18	89	0	67	21	46	19	12	1.82
749976--750000	13	1.9	13	100	0	50	16	40	24	20	1.91
751316--751351	18	2.0	18	88	0	54	52	0	16	30	1.44
752503--752575	24	3.0	24	83	0	92	23	9	16	50	1.74
754618--754676	18	3.3	18	92	0	100	18	49	20	11	1.79
755998--756033	18	2.0	18	88	0	54	52	0	16	30	1.44
757191--757263	24	3.0	24	85	0	101	21	9	17	50	1.74
758280--758344	20	3.2	20	82	0	85	44	23	16	15	1.86
758379--758430	20	2.6	20	90	0	77	15	19	21	44	1.87
760836--760865	3	10.3	3	92	7	53	0	33	0	66	0.92
760989--761040	24	2.2	24	82	0	59	36	17	19	26	1.94
761777--761815	15	2.5	15	83	4	51	66	0	5	28	1.12
761956--762046	20	4.6	20	73	14	80	32	13	21	31	1.92
761958--762046	40	2.2	40	87	0	124	33	13	21	31	1.92
762073--762210	20	6.8	20	76	17	119	16	18	24	39	1.91
762077--762195	61	1.9	62	85	8	163	17	18	23	40	1.91
762662--762718	15	3.7	15	77	9	69	17	28	33	21	1.96
765374--765432	29	2.0	29	96	0	109	25	13	13	47	1.79
770048--770134	28	3.1	28	93	3	156	22	13	13	49	1.78
772610--772635	12	2.2	12	100	0	52	19	26	23	30	1.98
781655--781700	24	1.9	24	100	0	92	41	15	13	30	1.85
784293--784341	2	25.0	2	80	12	57	46	4	2	46	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
784793--784820	2	14.0	2	100	0	56	50	0	0	50	1.00
787918--787947	6	5.0	6	100	0	60	16	50	16	16	1.79
788670--792099	194	17.8	194	97	1	6450	42	13	11	32	1.80
788670--792099	387	8.9	388	97	1	6450	42	13	11	32	1.80
788670--792099	771	4.4	774	97	1	6392	42	13	11	32	1.80
793656--793790	28	4.8	28	95	0	225	37	2	5	55	1.35
799334--799417	23	3.7	23	87	3	100	19	26	32	22	1.97
809951--810000	22	2.3	21	82	6	55	64	8	2	26	1.32
813913--813939	13	2.1	13	100	0	54	7	25	7	59	1.51
814493--814585	21	4.5	21	78	4	100	39	18	24	17	1.91

Tables:   1   2   3   4   5