genome.fa.s9405.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009405.1 Hibiscus syriacus cultivar Beakdansim tig00113337_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1310060

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 657 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1181513--1181565	10	5.5	10	80	8	65	30	26	22	20	1.98
1183360--1183420	23	2.7	23	100	0	122	16	26	27	29	1.97
1197128--1197210	22	3.8	22	83	0	103	34	20	16	27	1.94
1213699--1213775	37	2.1	37	83	9	95	48	1	3	46	1.28
1213921--1213958	20	1.9	20	88	0	58	21	26	10	42	1.85
1215016--1215090	21	3.7	20	81	3	78	28	25	17	29	1.97
1215078--1215306	20	11.4	20	85	3	232	37	25	17	20	1.93
1215997--1216043	24	2.0	24	87	8	69	25	14	21	38	1.92
1218497--1218666	52	3.2	52	81	8	170	46	17	21	15	1.84
1218549--1218642	33	2.8	33	95	1	170	46	17	22	13	1.83
1218497--1218666	19	9.7	19	71	23	149	46	17	21	15	1.84
1218485--1218660	86	2.1	85	92	3	293	47	17	21	14	1.83
1218637--1218752	53	2.2	52	86	3	160	18	23	18	38	1.93
1218675--1218762	19	4.8	19	82	14	123	13	22	15	47	1.81
1218853--1218889	14	2.6	14	91	0	65	45	21	0	32	1.52
1220821--1220941	19	6.6	19	80	9	144	47	26	19	7	1.75
1220806--1220908	38	2.7	38	77	14	104	45	26	18	9	1.80
1220880--1220972	33	2.8	33	90	0	150	46	23	20	9	1.80
1220821--1220941	52	2.2	55	89	7	185	47	26	19	7	1.75
1220839--1220977	52	2.7	52	76	8	156	46	24	20	8	1.79
1220821--1220977	19	8.8	19	75	13	136	46	24	20	8	1.79
1220989--1221047	14	3.9	14	76	20	64	6	16	28	47	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1220973--1221096	33	3.7	33	91	1	185	8	17	27	45	1.78
1220973--1221064	19	5.4	18	72	24	83	7	17	28	46	1.75
1221022--1221078	14	3.7	14	72	20	51	8	22	24	43	1.81
1223010--1223106	20	5.2	20	72	18	100	46	17	24	11	1.81
1223008--1223072	21	3.1	21	82	4	96	47	15	26	10	1.78
1223057--1223113	14	3.7	14	75	20	60	43	22	24	8	1.81
1223008--1223130	33	3.5	33	90	8	165	46	18	24	10	1.81
1223158--1223231	21	3.5	21	80	7	96	14	20	17	47	1.83
1223311--1223381	33	2.2	33	92	0	115	47	16	22	12	1.80
1223761--1223893	20	6.7	20	91	1	205	19	19	28	32	1.96
1223760--1223912	60	2.5	60	87	2	209	19	19	26	33	1.96
1223906--1223951	20	2.2	21	88	3	67	36	15	23	23	1.93
1227391--1227416	2	13.0	2	100	0	52	0	50	0	50	1.00
1232664--1232836	60	2.9	60	77	13	178	39	4	21	34	1.74
1232689--1232836	59	2.5	59	81	9	176	39	3	21	35	1.70
1241021--1241416	160	2.5	161	92	2	656	46	5	18	29	1.72
1241263--1241557	143	2.0	145	84	3	389	49	4	17	28	1.66
1242296--1242338	20	2.1	21	86	4	61	2	11	41	44	1.53
1242357--1242481	28	4.2	28	84	6	142	48	30	5	15	1.67
1247758--1247783	2	13.0	2	100	0	52	50	0	0	50	1.00
1248286--1248330	20	2.2	20	88	0	63	35	8	11	44	1.71
1249799--1249848	22	2.2	22	85	3	64	30	2	2	66	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1257075--1257133	2	29.5	2	100	0	118	50	0	0	49	1.00
1260361--1260446	39	2.2	40	91	4	140	44	19	8	27	1.79
1260533--1260618	39	2.2	39	89	4	129	43	18	8	30	1.79
1260353--1260707	172	2.1	172	94	1	622	48	13	5	32	1.66
1260659--1260722	17	3.8	17	73	8	58	56	0	0	43	0.99
1268502--1269284	391	2.0	390	98	0	1512	40	18	15	25	1.89
1269458--1269493	18	2.0	18	100	0	72	27	16	33	22	1.95
1269872--1269906	17	2.1	17	100	0	70	22	22	25	28	1.99
1278619--1278738	54	2.2	53	83	5	143	59	15	12	13	1.62
1279222--1279261	21	1.9	21	89	0	62	52	5	5	37	1.45
1291501--1291537	6	6.2	6	100	0	74	35	32	32	0	1.58
1292879--1292903	10	2.5	10	100	0	50	8	8	0	84	0.79
1307258--1307309	23	2.2	23	83	10	61	32	7	5	53	1.53

Tables:   1   2   3   4   5   6

The End!