genome.fa.s9461.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009461.1 Hibiscus syriacus cultivar Beakdansim tig00113724_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2346588

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1395 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2100204--2100246	19	2.2	19	83	4	50	41	2	2	53	1.26
2100433--2100560	63	2.0	63	96	0	238	34	25	18	21	1.96
2103415--2103462	17	2.8	16	78	12	51	56	0	2	41	1.11
2106022--2106064	21	2.0	21	90	9	68	72	0	0	27	0.85
2106022--2106064	4	10.8	4	85	9	61	72	0	0	27	0.85
2106687--2106717	13	2.4	13	94	0	53	74	0	9	16	1.07
2111762--2111786	13	1.9	13	100	0	50	80	0	8	12	0.92
2115489--2115527	20	2.0	20	89	0	60	20	25	25	28	1.99
2119524--2119565	2	21.5	2	95	4	77	47	0	0	52	1.00
2129718--2129760	22	2.0	21	86	13	61	51	9	16	23	1.73
2148130--2148245	58	2.0	58	93	1	198	26	35	13	24	1.93
2149111--2149201	20	4.8	20	76	13	93	23	31	19	25	1.98
2149150--2149180	15	2.1	15	93	0	53	25	25	22	25	2.00
2149131--2149200	35	2.0	35	88	0	104	22	31	21	24	1.98
2149380--2149419	20	1.9	21	85	10	55	37	37	10	15	1.80
2151674--2151698	12	2.1	12	100	0	50	8	0	0	92	0.40
2162839--2162865	2	13.5	2	100	0	54	48	0	0	51	1.00
2164853--2164882	2	15.0	2	100	0	60	50	0	0	50	1.00
2168140--2168224	42	2.0	42	95	0	152	54	9	15	21	1.69
2181693--2181745	27	2.0	28	86	13	78	37	3	15	43	1.64
2185443--2185503	24	2.5	24	94	0	104	42	18	22	16	1.89
2186756--2186789	16	2.1	16	88	0	50	41	0	14	44	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2187037--2187076	21	1.9	21	94	0	71	35	12	20	32	1.90
2187038--2187095	21	2.9	20	85	10	66	32	13	20	32	1.92
2187060--2187156	50	2.0	49	87	6	142	31	15	19	32	1.93
2187621--2187653	16	2.0	17	94	5	59	60	6	3	30	1.36
2191826--2191867	21	2.0	21	95	0	75	30	14	7	47	1.71
2191856--2191932	33	2.4	33	84	4	113	31	7	15	45	1.75
2205001--2205122	43	2.8	45	83	6	160	31	8	27	32	1.86
2206944--2206975	2	16.0	2	100	0	64	50	0	0	50	1.00
2208071--2208174	30	3.5	30	75	17	99	23	5	13	57	1.57
2208168--2208230	23	2.8	22	78	4	63	28	19	12	39	1.88
2208302--2208365	22	3.0	22	77	11	69	15	7	18	57	1.62
2212181--2212215	17	2.0	18	88	5	54	34	0	0	65	0.93
2212361--2212684	160	2.0	161	93	1	560	36	12	15	36	1.85
2214242--2214294	27	2.0	27	88	0	79	47	18	13	20	1.82
2215249--2215383	39	3.5	39	80	4	146	25	25	17	31	1.97
2218346--2218412	32	2.1	32	100	0	134	25	47	5	20	1.73
2221332--2221389	23	2.5	23	88	8	82	53	0	1	44	1.10
2221332--2221415	18	3.8	22	73	23	61	51	0	1	47	1.08
2230892--2230924	11	3.0	11	100	0	66	27	0	9	63	1.24
2244220--2244245	13	2.0	13	100	0	52	23	30	7	38	1.83
2248228--2248258	13	2.4	13	100	0	62	12	22	0	64	1.27
2256332--2256372	19	2.2	19	100	0	82	24	29	29	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2257944--2258104	64	2.5	62	83	7	191	39	22	5	32	1.78
2259813--2259876	30	2.1	30	91	5	103	34	12	23	29	1.92
2260400--2260447	9	5.2	9	79	2	51	54	2	12	31	1.49
2263807--2263902	44	2.2	44	79	3	104	38	9	20	31	1.85
2264198--2264248	24	2.1	24	96	0	93	21	21	27	29	1.99
2264484--2264526	9	4.8	9	79	0	50	53	2	13	30	1.53
2280241--2280272	16	2.0	16	93	0	55	31	3	0	65	1.08
2282107--2282495	194	2.0	194	100	0	778	29	17	15	37	1.92
2285068--2285460	153	2.6	154	84	4	474	29	18	5	46	1.73
2285098--2285490	154	2.6	154	82	6	397	29	17	6	46	1.72
2285716--2285751	2	18.0	2	100	0	72	50	0	0	50	1.00
2293289--2293355	31	2.2	31	94	0	116	35	14	28	20	1.93
2294405--2294475	31	2.3	31	85	4	90	28	25	9	36	1.88
2294416--2294482	31	2.2	31	86	0	98	23	29	11	34	1.91
2295263--2295330	2	37.0	2	80	16	76	45	0	0	54	0.99
2295866--2295917	24	2.2	24	96	0	95	25	15	28	30	1.96
2307109--2307143	17	2.1	17	100	0	70	28	5	22	42	1.76
2315111--2315619	228	2.3	227	92	2	848	47	13	15	23	1.81
2317218--2317269	27	1.9	27	84	0	68	28	13	25	32	1.93
2318963--2319330	111	3.3	111	90	1	540	32	11	11	45	1.75
2319799--2320212	111	3.7	111	93	1	670	31	12	10	44	1.76
2320688--2321154	111	4.2	111	88	1	654	30	11	11	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2318958--2321260	909	2.5	913	91	1	3719	35	10	10	43	1.74
2321632--2321760	23	5.8	23	69	15	85	34	13	9	42	1.77
2321528--2321786	87	3.0	86	88	2	374	33	12	10	44	1.76
2321820--2321855	16	2.2	16	90	5	54	30	25	5	38	1.78
2322598--2322672	20	3.1	25	68	27	79	49	1	4	45	1.29
2322592--2322667	23	3.3	22	73	12	80	48	1	2	47	1.24
2326080--2326128	19	2.6	19	96	3	91	53	20	10	16	1.72
2326207--2326529	159	2.0	159	98	0	628	35	6	30	27	1.83
2328950--2328987	20	1.9	20	100	0	76	21	28	36	13	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!