genome.fa.s9461.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009461.1 Hibiscus syriacus cultivar Beakdansim tig00113724_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2346588

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  9  of  12  ( 1395 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1616379--1616469	39	2.3	40	81	10	116	79	7	12	1	0.99
1616380--1616455	20	3.9	20	77	16	79	80	6	13	0	0.90
1616380--1616463	31	2.6	31	78	10	89	79	7	11	1	0.97
1616377--1616469	13	7.1	13	69	18	59	79	7	11	1	0.98
1616380--1616469	7	12.6	7	77	10	67	80	6	12	1	0.96
1617077--1617153	22	3.5	22	96	0	136	37	25	12	23	1.91
1617345--1617407	24	2.6	24	84	2	90	36	19	3	41	1.67
1617987--1619570	106	15.0	106	88	3	2237	34	24	17	23	1.96
1620299--1620404	37	2.9	37	85	0	140	40	14	14	31	1.85
1620923--1620967	21	2.1	22	84	12	58	28	2	2	66	1.15
1620926--1620976	21	2.7	18	75	21	50	31	1	1	64	1.15
1620997--1621062	2	34.0	2	93	6	118	50	0	0	50	1.00
1621205--1621239	5	6.8	5	87	6	52	34	2	0	62	1.10
1621212--1621259	16	2.9	16	84	3	60	31	4	4	60	1.35
1624371--1624797	81	5.3	81	91	0	656	29	24	11	33	1.91
1625039--1625083	22	2.1	22	87	4	65	26	28	24	20	1.99
1625635--1625720	23	3.7	23	72	18	79	26	24	27	20	1.99
1627137--1627473	81	4.2	81	89	2	516	31	24	10	32	1.90
1627412--1627534	61	2.0	61	93	0	210	29	24	11	34	1.90
1627472--1627833	81	4.5	81	88	1	548	30	24	11	33	1.91
1627472--1627833	160	2.2	161	90	0	555	30	24	11	33	1.91
1628447--1628494	19	2.5	19	89	0	69	29	31	14	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1632893--1632956	31	2.1	31	93	0	110	45	6	9	39	1.62
1640434--1640474	19	2.2	19	86	0	55	60	12	4	21	1.50
1641340--1641446	24	4.5	24	72	0	88	46	16	14	21	1.83
1641340--1641448	48	2.3	48	75	0	110	46	16	15	21	1.83
1642583--1642618	18	2.0	18	88	0	54	22	22	5	50	1.70
1643944--1644020	18	4.6	18	81	15	110	11	20	50	16	1.76
1643938--1644016	31	2.5	31	95	0	149	13	21	48	16	1.81
1643923--1643962	8	5.5	8	77	22	52	20	25	40	15	1.90
1643923--1643998	13	5.3	13	77	17	71	17	22	44	15	1.86
1646148--1646254	24	4.5	24	72	0	88	46	16	14	21	1.83
1646148--1646256	48	2.3	48	75	0	110	46	16	15	21	1.83
1647391--1647426	18	2.0	18	88	0	54	22	22	5	50	1.70
1648750--1648826	18	4.6	18	81	15	110	11	20	50	16	1.76
1648744--1648822	31	2.5	31	95	0	149	13	21	48	16	1.81
1648729--1648768	8	5.5	8	77	22	52	20	25	40	15	1.90
1648729--1648804	13	5.3	13	77	17	71	17	22	44	15	1.86
1652846--1652912	18	3.4	18	74	22	55	34	17	23	23	1.96
1662880--1662919	21	1.9	21	90	10	64	52	0	10	37	1.35
1671323--1671380	25	2.3	25	93	0	98	39	22	6	31	1.80
1673810--1673860	20	2.6	19	84	9	59	29	21	3	45	1.70
1676569--1676717	23	6.4	23	77	6	74	34	24	23	18	1.96
1676616--1676717	46	2.2	46	87	0	150	35	24	22	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1676616--1676717	23	4.4	23	83	0	132	35	24	22	17	1.95
1678220--1678316	29	3.3	29	81	7	106	43	9	8	39	1.67
1678234--1678322	30	3.1	28	82	7	106	46	7	6	39	1.60
1678406--1678431	2	13.0	2	100	0	52	50	0	0	50	1.00
1680237--1680305	9	8.1	9	70	22	51	60	0	1	37	1.06
1680251--1680427	26	6.5	27	70	22	104	54	4	1	39	1.31
1680247--1680345	17	5.5	18	74	19	82	56	2	2	39	1.22
1680239--1680460	43	4.9	43	74	14	155	56	4	1	37	1.28
1680240--1680354	18	6.5	17	70	27	71	56	1	1	40	1.20
1680239--1680460	12	19.1	12	70	18	123	56	4	1	37	1.28
1680401--1680437	19	1.9	19	88	0	56	64	2	0	32	1.07
1680389--1680460	31	2.3	31	92	0	117	61	4	0	34	1.16
1680964--1681026	23	2.9	22	86	6	83	9	23	17	49	1.76
1680975--1681031	23	2.4	24	91	2	89	5	24	17	52	1.65
1680975--1681044	24	3.0	24	77	8	65	7	22	21	48	1.74
1685139--1685185	21	2.2	21	88	0	76	23	23	17	36	1.95
1685146--1685191	21	2.2	21	84	0	56	26	23	19	30	1.98
1685183--1685227	20	2.2	20	92	0	72	37	22	20	20	1.94
1685221--1685267	20	2.3	20	82	7	60	38	25	14	21	1.92
1685255--1685307	19	2.7	20	82	8	72	37	24	11	26	1.89
1685506--1685540	16	2.2	16	89	0	52	28	5	0	65	1.15
1686253--1686305	23	2.2	24	86	3	72	24	16	16	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1688950--1689043	20	5.0	20	67	17	67	20	21	21	37	1.95
1689465--1689500	18	2.0	18	88	0	54	33	5	11	50	1.61
1689457--1689509	24	2.2	24	83	6	63	37	3	13	45	1.61
1689812--1689898	39	2.2	39	87	0	129	45	21	16	16	1.84
1690110--1690168	20	3.0	20	84	0	82	40	27	20	11	1.87
1690110--1690175	20	3.3	21	80	16	77	42	27	19	10	1.84
1690301--1690354	28	1.9	28	84	0	72	48	20	0	31	1.50
1690318--1690354	14	2.6	14	100	0	74	48	21	0	29	1.50
1691766--1691860	21	4.5	21	76	5	93	18	18	37	24	1.94
1691766--1691883	42	2.8	42	80	5	130	21	17	36	24	1.95
1694018--1694070	20	2.7	20	93	0	88	49	20	18	11	1.78
1694577--1694745	20	8.5	20	80	8	202	20	15	22	40	1.90
1694590--1694799	59	3.5	59	77	14	209	21	15	23	39	1.91
1695655--1696006	29	11.8	30	72	14	239	36	7	1	54	1.41
1695655--1695858	87	2.3	88	89	5	297	35	8	0	54	1.37
1695822--1696007	60	3.1	60	83	8	218	36	6	3	54	1.42
1696078--1696208	29	4.6	28	73	13	106	57	2	6	34	1.36
1696073--1696169	26	3.3	31	67	22	82	60	3	7	28	1.38
1696091--1696174	28	3.1	25	71	23	80	58	2	7	32	1.38
1696160--1696230	29	2.4	29	93	4	117	59	1	4	35	1.26
1702875--1702910	2	18.0	2	100	0	72	50	0	0	50	1.00
1703282--1703378	39	2.5	39	87	0	149	31	23	26	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1706147--1706225	32	2.5	32	82	0	95	35	25	11	27	1.90
1711961--1712135	86	2.0	87	87	3	253	30	17	13	37	1.89
1713200--1713261	12	5.0	12	70	14	54	43	1	9	45	1.46
1713174--1713648	37	12.7	38	86	8	488	43	4	8	44	1.53
1713212--1713648	39	11.6	37	86	6	490	43	4	8	43	1.54
1713633--1713668	2	18.0	2	100	0	72	50	0	0	50	1.00
1714840--1714967	17	7.8	16	67	19	68	17	5	1	75	1.08
1714827--1714898	22	3.2	22	90	5	101	15	4	1	79	0.96
1714834--1714967	63	2.2	59	76	21	136	18	5	1	74	1.08
1714834--1714973	16	8.9	15	66	26	60	19	5	1	74	1.08
1714841--1714978	9	15.2	9	71	24	62	19	5	1	73	1.09
1714921--1714954	13	2.5	14	90	4	52	17	2	2	76	1.04
1714949--1714987	3	13.7	3	84	10	55	33	0	0	66	0.92
1714949--1714987	20	2.0	20	89	0	60	33	0	0	66	0.92
1718962--1719163	99	2.0	99	90	0	314	34	15	17	33	1.91
1720760--1721089	86	3.8	86	87	2	450	37	20	16	25	1.93
1721946--1722354	38	10.8	38	79	13	318	45	3	7	43	1.49
1721942--1722251	158	2.0	156	81	7	369	45	3	7	42	1.50
1722338--1722379	2	21.0	2	95	0	75	52	0	0	47	1.00
1722103--1722354	74	3.4	76	80	11	274	46	3	6	43	1.47
1722379--1722404	4	6.5	4	100	0	52	23	0	0	76	0.78
1723628--1723690	22	3.0	22	75	13	69	19	11	0	69	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1724893--1724922	6	5.2	6	92	8	53	0	13	0	86	0.57
1724958--1725019	2	31.0	2	100	0	124	50	0	0	50	1.00
1736308--1736334	14	1.9	14	100	0	54	40	22	14	22	1.90
1736806--1736976	94	1.8	93	86	7	247	36	22	20	19	1.95
1747722--1747766	19	2.3	21	75	25	53	44	6	0	48	1.29
1749340--1749384	8	5.6	8	86	0	54	71	2	2	24	1.09
1749570--1749629	25	2.4	25	80	0	75	40	10	15	35	1.80
1749899--1750061	38	4.0	41	80	10	165	38	0	0	60	1.01
1749919--1749996	19	4.3	18	78	16	90	34	0	0	65	0.93
1749916--1750000	38	2.2	38	100	0	170	35	0	0	64	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12