genome.fa.s9461.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009461.1 Hibiscus syriacus cultivar Beakdansim tig00113724_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2346588

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  4  of  12  ( 1395 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
626419--626454	18	2.0	18	88	0	54	27	19	16	36	1.93
626711--626808	21	4.8	21	74	16	73	29	28	12	29	1.93
626711--626807	20	4.7	21	72	14	69	29	27	12	29	1.93
626835--626942	40	2.7	40	82	0	117	31	23	11	34	1.90
626832--626901	20	3.5	20	75	7	70	30	24	10	35	1.88
626853--626942	20	4.5	20	69	14	69	32	21	11	35	1.88
627193--627230	17	2.2	17	100	0	76	28	5	23	42	1.76
627894--627947	24	2.2	24	93	0	90	20	18	20	40	1.91
630452--630509	20	2.9	20	76	5	64	43	20	17	18	1.89
630509--630547	20	2.0	20	89	0	60	38	25	15	20	1.92
630627--630661	16	2.2	16	89	0	52	65	14	0	20	1.26
632060--632219	21	7.6	21	84	0	212	23	16	37	22	1.94
632633--632672	21	1.9	21	89	0	62	37	37	10	15	1.80
634340--634406	20	3.4	19	83	4	80	49	20	16	13	1.79
634345--634403	20	3.0	20	87	0	82	50	22	16	10	1.75
634408--634459	20	2.5	20	84	3	68	19	13	15	51	1.75
634409--634466	20	2.9	20	86	0	62	18	13	15	51	1.76
634777--634819	22	2.0	22	85	0	59	18	9	44	27	1.80
634923--634960	20	2.0	20	84	5	51	44	13	15	26	1.83
634986--635035	20	2.5	20	83	0	73	24	16	22	38	1.93
644295--644325	15	2.1	15	93	0	53	54	0	0	45	0.99
649191--649253	16	4.1	16	76	12	60	65	3	3	28	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
649225--649309	4	20.8	4	74	13	57	67	3	5	23	1.29
649219--649316	18	5.4	18	70	19	62	66	3	7	23	1.31
651073--651152	37	2.2	36	79	2	88	37	13	23	25	1.92
651105--651288	65	2.8	65	82	7	221	36	9	21	31	1.86
651163--651808	103	6.3	103	92	0	1044	36	11	20	31	1.88
651163--651808	205	3.1	206	91	0	1053	36	11	20	31	1.88
651168--651808	308	2.1	308	92	0	1075	36	11	20	31	1.88
651839--652132	72	4.2	72	85	8	346	41	11	18	28	1.86
653308--653527	95	2.5	88	79	15	265	29	19	20	30	1.97
653365--653546	95	1.9	95	92	2	303	29	19	19	31	1.96
657954--657984	16	1.9	16	93	0	53	74	0	3	22	0.96
659146--659189	20	2.2	20	83	0	52	40	22	15	20	1.90
659183--659381	20	10.0	20	75	12	162	43	23	12	20	1.86
659195--659381	60	3.1	59	77	5	180	43	22	12	21	1.85
662054--662132	21	3.8	21	77	12	81	25	37	17	18	1.93
662052--662150	42	2.4	42	77	6	110	24	34	19	22	1.96
664005--664091	39	2.2	39	97	0	165	17	14	20	47	1.83
664393--664445	24	2.2	25	80	10	65	45	13	5	35	1.67
664401--664437	18	2.1	18	89	0	56	51	10	5	32	1.60
664401--664456	24	2.3	24	84	6	78	50	12	5	32	1.63
664875--664917	20	2.2	20	95	0	77	13	16	25	44	1.85
667472--667525	24	2.2	24	90	0	81	38	20	20	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668416--668505	40	2.3	39	86	3	119	25	13	23	37	1.91
668416--668505	19	4.6	20	82	9	105	25	13	23	37	1.91
674938--674974	19	1.9	19	94	0	65	54	2	2	40	1.29
678728--678764	18	2.1	18	100	0	74	10	48	40	0	1.38
679580--679647	3	22.7	3	96	0	127	64	0	1	33	1.02
679967--680643	116	5.9	117	91	2	926	29	20	12	37	1.90
681372--682078	83	8.5	83	96	0	1137	37	21	12	28	1.90
683131--683200	9	8.3	9	70	29	57	1	17	0	81	0.77
683130--683199	14	5.0	15	75	20	64	1	15	0	82	0.73
683128--683196	10	6.8	10	77	12	61	1	15	0	82	0.74
683134--683198	33	2.0	33	87	6	96	1	15	0	83	0.73
693843--693887	17	2.7	17	82	3	56	62	0	6	31	1.21
696019--696074	3	18.7	3	96	0	103	64	0	1	33	1.04
722625--722658	16	2.2	15	89	5	50	55	0	0	44	0.99
724456--724520	18	3.6	18	75	19	55	13	40	21	24	1.90
724557--724604	18	2.7	18	100	0	96	16	27	22	33	1.96
729708--729750	18	2.4	18	100	0	86	23	44	4	27	1.73
729708--729768	18	3.4	18	88	4	61	19	47	6	26	1.74
729762--729804	21	2.0	21	86	0	59	18	32	2	46	1.62
736532--736582	19	2.7	19	85	8	70	25	15	35	23	1.94
736426--736633	65	3.2	65	81	12	216	27	17	25	29	1.97
736801--736840	20	2.0	21	85	14	57	45	7	5	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
744905--745067	65	2.5	64	84	3	220	26	15	26	30	1.96
745015--745065	19	2.7	19	85	8	70	25	15	35	23	1.94
744909--745116	65	3.2	65	81	12	207	26	17	25	29	1.97
745284--745323	20	2.0	21	85	14	57	45	7	5	42	1.54
750796--750836	21	2.0	21	95	0	73	17	24	17	41	1.89
750797--750843	21	2.2	21	88	0	67	21	23	19	36	1.95
751063--751128	22	3.0	22	88	0	96	25	37	15	21	1.92
751477--751623	20	7.7	20	81	9	146	14	18	24	42	1.87
751481--751624	73	2.0	74	97	1	272	14	18	25	42	1.88
753113--753142	6	5.0	6	100	0	60	16	66	0	16	1.25
753524--753720	20	10.5	20	80	14	188	40	20	19	19	1.92
753767--753833	20	3.3	20	91	0	71	19	17	23	38	1.93
753765--753843	20	4.0	20	80	3	61	18	17	22	40	1.91
754312--754423	42	2.7	42	80	2	109	21	38	17	22	1.93
754316--754420	21	5.0	21	74	3	95	20	37	19	22	1.95
755807--755842	14	2.6	14	90	0	54	30	0	22	47	1.52
755976--756041	33	2.0	34	93	3	116	46	13	25	13	1.80
756054--756123	19	3.9	19	75	19	78	11	22	18	47	1.81
756058--756153	33	2.9	34	87	3	131	13	22	19	43	1.86
756125--756193	20	3.5	20	90	4	104	17	21	24	36	1.95
758624--758677	24	2.2	24	93	0	90	40	20	18	20	1.91
758624--758691	24	2.8	24	84	0	64	38	20	17	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
759518--759604	20	4.3	20	88	5	131	22	19	26	31	1.98
759591--759643	20	2.7	20	84	0	70	22	18	16	41	1.90
759518--759624	40	2.7	40	84	5	101	24	18	23	33	1.97
759640--759684	20	2.2	20	84	4	54	40	17	24	17	1.91
760572--760598	13	2.1	13	100	0	54	29	7	7	55	1.55
761347--761377	16	1.9	16	93	0	53	9	9	3	77	1.10
765733--765806	36	2.1	36	97	0	139	40	25	17	16	1.90
765733--765818	36	2.4	36	92	0	118	41	25	18	13	1.88
767102--767170	2	34.5	2	100	0	138	50	0	0	49	1.00
767285--767337	2	26.5	2	100	0	106	49	0	0	50	1.00
773182--773223	22	1.9	22	85	9	59	26	2	11	59	1.45
774941--774976	17	2.0	17	89	10	54	55	0	0	44	0.99
777594--777698	17	5.8	18	73	19	76	40	0	1	58	1.09
777592--777698	30	3.6	29	72	8	90	39	0	1	58	1.09
777620--777698	12	6.4	12	75	16	81	43	0	1	55	1.07
777599--777752	62	2.5	63	88	6	217	43	0	1	54	1.11
777717--777786	21	3.2	22	71	16	56	41	1	1	55	1.17
777747--777808	19	3.3	19	78	15	58	37	1	0	61	1.06
778045--778094	23	2.3	22	80	16	59	62	2	2	34	1.18
778268--778327	31	1.9	31	93	0	102	43	10	6	40	1.64
784011--784070	29	2.1	28	93	3	102	50	8	13	28	1.70
796488--796748	44	5.9	44	85	0	324	24	19	22	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
803527--803751	44	5.1	44	91	1	362	24	21	21	32	1.98
808506--808569	20	3.2	20	79	0	74	35	9	14	40	1.78
811722--811779	18	3.1	18	76	13	71	27	10	10	51	1.68
811722--811779	21	3.0	20	78	11	68	27	10	10	51	1.68
812018--812076	20	3.0	20	94	0	109	33	18	15	32	1.92
812197--812236	21	1.9	21	94	0	71	30	20	27	22	1.98
812515--812585	34	2.1	33	84	2	88	30	16	28	23	1.97
813392--813519	64	2.0	64	100	0	256	34	20	9	35	1.85
814215--814243	14	2.1	14	100	0	58	34	34	13	17	1.89
814543--814590	19	2.5	20	82	3	62	52	6	12	29	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12