genome.fa.s9573.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009573.1 Hibiscus syriacus cultivar Beakdansim tig00116938_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1247605

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 707 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282417--282478	21	3.0	21	90	0	88	24	6	19	50	1.71
285474--285537	23	2.8	23	82	0	92	32	28	23	15	1.95
285665--285768	36	2.8	37	85	2	138	42	14	13	29	1.84
286126--286168	18	2.5	17	85	7	61	25	4	2	67	1.22
286156--286232	20	4.0	20	67	23	56	33	2	1	62	1.17
289195--289229	14	2.5	14	100	0	70	14	37	22	25	1.92
290305--290841	183	2.9	182	94	1	923	27	20	21	30	1.98
291998--292111	36	3.2	34	73	9	95	25	15	14	44	1.84
291982--292143	72	2.2	76	86	8	228	27	18	12	40	1.87
292173--292324	39	3.6	39	67	22	108	28	21	13	36	1.91
292227--292545	105	3.1	104	91	2	500	30	21	12	36	1.90
292446--292516	36	2.0	36	91	0	115	23	23	16	35	1.95
292720--293350	105	6.0	105	88	3	880	33	25	17	22	1.96
293893--293995	36	2.8	36	83	5	127	40	15	14	29	1.87
294352--294395	18	2.6	17	85	7	63	25	4	2	68	1.20
294382--294503	64	2.0	63	79	9	137	35	4	0	60	1.16
297630--297686	20	2.8	20	89	10	66	45	19	7	28	1.76
300538--300644	11	9.5	11	69	8	63	26	22	20	30	1.98
300538--300633	23	4.2	23	78	6	106	26	21	20	31	1.98
303302--303505	60	3.4	60	80	1	239	35	11	17	36	1.85
303419--303533	60	1.9	60	85	0	158	38	10	13	37	1.80
304515--304543	12	2.4	12	100	0	58	62	6	6	24	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310790--310835	19	2.4	20	78	10	60	26	2	0	71	0.97
329082--329114	17	2.0	17	88	5	50	39	6	9	45	1.61
331970--332000	15	2.1	15	100	0	62	25	19	25	29	1.99
341554--341634	28	2.9	28	88	0	108	35	23	18	22	1.95
345824--345903	28	2.9	28	92	1	126	35	27	18	18	1.95
347484--347519	14	2.6	14	100	0	72	19	30	0	50	1.48
349026--349081	19	3.0	18	82	7	67	21	12	7	58	1.57
349035--349081	18	2.5	19	82	3	60	23	10	6	59	1.53
353300--353336	18	2.1	18	100	0	74	27	21	24	27	1.99
356729--356849	63	1.9	64	86	5	174	35	19	18	26	1.95
356766--356890	64	2.0	63	82	7	155	35	22	17	24	1.95
357532--357590	23	2.6	23	83	0	82	20	28	23	27	1.99
359262--359336	20	3.7	19	72	18	71	13	21	24	41	1.88
359967--360165	5	38.6	5	92	5	125	0	18	49	32	1.51
360259--360412	41	3.8	41	87	3	215	40	24	20	14	1.90
360256--360371	21	5.6	20	69	16	76	38	26	19	14	1.91
364236--364261	13	2.0	13	100	0	52	15	23	0	61	1.33
364923--364968	21	2.2	21	88	0	65	36	28	15	19	1.92
364930--364969	21	1.9	21	94	0	71	32	30	15	22	1.94
364995--365033	19	2.1	19	85	0	51	23	30	12	33	1.92
364930--365139	64	3.2	65	78	7	196	32	24	15	27	1.96
365111--365159	19	2.6	19	84	9	57	24	30	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364980--365158	64	2.8	63	77	11	177	30	25	16	27	1.96
367080--367126	21	2.3	21	85	10	62	53	2	10	34	1.48
373523--373568	21	2.2	21	88	0	65	36	28	15	19	1.92
373530--373569	21	1.9	21	94	0	71	32	30	15	22	1.94
373595--373633	19	2.1	19	95	0	69	20	33	15	30	1.94
373530--373693	62	2.5	65	80	6	183	32	23	16	27	1.96
373587--373735	62	2.4	61	82	6	167	29	24	16	29	1.97
375551--375803	124	2.0	121	91	6	319	27	24	16	31	1.97
380649--380695	22	2.1	23	84	7	62	19	25	27	27	1.99
380649--380704	22	2.5	22	77	11	60	21	26	23	28	1.99
381086--381115	10	3.0	10	90	0	51	30	10	6	53	1.60
383003--383044	22	2.0	22	85	4	59	30	0	38	30	1.58
383397--383554	55	2.9	55	93	0	271	29	23	22	24	1.99
384285--384548	44	6.0	44	85	2	343	25	20	12	41	1.88
384984--385096	61	1.9	60	94	3	201	25	23	14	37	1.92
390115--390140	13	2.0	13	100	0	52	15	23	46	15	1.83
390085--390138	18	2.9	18	91	8	83	11	22	50	16	1.77
397136--397176	13	3.4	13	80	19	61	12	21	48	17	1.79
397159--397202	21	2.0	22	86	4	63	22	22	36	18	1.95
397181--397239	31	2.0	29	93	6	100	30	28	23	16	1.97
397226--397262	19	2.1	18	90	10	58	35	29	16	18	1.93
399986--400295	44	7.0	44	89	0	440	23	21	12	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404819--404931	60	1.9	60	83	3	147	46	4	20	29	1.70
407145--407302	21	7.8	20	72	7	86	38	25	17	18	1.92
407269--407462	20	9.6	20	80	5	212	36	25	19	19	1.95
407269--407462	60	3.2	60	82	0	244	36	25	19	19	1.95
407844--407914	33	2.2	33	89	0	106	11	23	16	47	1.79
407994--408099	21	5.6	20	70	16	91	45	18	25	10	1.81
407992--408070	21	3.8	21	79	12	92	45	16	26	11	1.81
407987--408103	41	3.1	38	79	14	136	46	17	26	10	1.80
408057--408110	14	3.5	14	73	22	54	42	24	25	7	1.80
408046--408115	33	2.1	33	97	0	131	47	20	25	7	1.75
408052--408126	33	2.3	33	92	0	123	46	24	22	6	1.75
408122--408219	19	5.7	19	70	22	81	10	24	22	42	1.84
408144--408233	14	5.7	14	74	23	81	8	25	23	42	1.83
408127--408241	33	3.5	33	95	0	212	9	24	20	45	1.81
409936--410314	93	4.1	93	97	1	726	22	12	18	45	1.83
409936--410316	184	2.1	185	97	1	728	22	12	18	45	1.83
410358--410486	19	7.3	19	75	17	125	45	28	17	8	1.77
410394--410486	33	2.8	32	91	4	150	46	27	18	7	1.76
410358--410486	52	2.5	52	74	14	140	45	28	17	8	1.77
410482--410616	19	7.6	19	75	16	128	10	19	23	46	1.80
410504--410560	14	3.7	14	77	20	60	8	21	22	47	1.78
410487--410579	33	2.8	33	95	0	168	9	20	21	48	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412540--412575	14	2.6	14	95	0	63	33	0	22	44	1.53
412682--412779	19	5.4	19	84	13	143	45	17	22	14	1.84
412682--412797	53	2.2	53	98	1	225	43	18	24	13	1.86
412804--412956	33	4.5	33	74	16	159	13	22	17	45	1.84
412826--413042	19	12.4	19	76	19	231	13	21	17	46	1.83
412804--413014	52	4.0	52	98	0	404	14	23	16	45	1.83
412845--413042	33	5.8	33	75	14	188	13	21	18	46	1.83
415322--415346	12	2.1	12	100	0	50	0	28	0	72	0.86
415521--415567	24	2.0	24	87	8	69	38	21	14	25	1.92
416250--416459	20	10.5	20	84	2	206	19	18	24	37	1.94
416426--416523	20	4.8	20	77	3	79	21	18	23	36	1.95
416426--416582	61	2.6	60	80	7	176	19	17	25	38	1.93
416426--416582	41	3.9	41	70	14	110	19	17	25	38	1.93
417540--417597	15	3.6	16	75	24	59	36	5	1	56	1.32
417570--417602	15	2.1	16	88	5	50	33	3	0	63	1.10
418110--418256	60	2.4	59	85	8	183	29	16	19	34	1.93
418109--418202	29	3.2	28	70	14	82	31	13	18	36	1.90
418466--418517	2	26.0	2	100	0	104	50	0	0	50	1.00
418703--418732	15	2.0	15	100	0	60	13	46	0	40	1.43
421610--421654	23	2.0	23	81	0	54	33	24	22	20	1.97
423110--423167	20	2.6	22	89	10	84	25	22	22	29	1.99
423282--423353	19	3.8	19	90	0	108	19	30	16	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423154--423314	64	2.5	63	83	7	200	24	25	19	31	1.98
428198--428359	64	2.5	62	84	5	225	24	23	19	32	1.98
431738--431920	60	3.0	60	82	4	210	32	24	4	38	1.77
434066--434119	17	3.2	17	87	7	76	38	1	9	50	1.45
434468--434521	14	3.6	14	74	13	54	16	0	35	48	1.47
434785--434965	2	92.0	2	69	15	110	45	5	2	46	1.41
435160--435206	18	2.5	20	89	6	71	25	25	0	48	1.51
435160--435214	19	2.9	20	86	7	62	27	25	0	47	1.52
435165--435253	46	2.0	45	88	6	135	28	26	0	44	1.54
435849--435893	21	2.1	22	87	4	65	46	2	2	48	1.26

Tables:   1   2   3   4   5   6