genome.fa.s9573.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009573.1 Hibiscus syriacus cultivar Beakdansim tig00116938_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1247605

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 707 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1111223--1111279	4	13.8	4	80	14	62	19	1	3	75	1.04
1116223--1116490	113	2.4	109	88	4	378	30	8	19	41	1.82
1116232--1116490	109	2.3	111	89	5	382	30	8	18	41	1.82
1116223--1116503	55	5.0	58	75	10	262	30	8	18	41	1.81
1116730--1117081	38	9.1	39	81	4	374	32	15	14	37	1.88
1116730--1117081	115	3.0	116	82	2	422	32	15	14	37	1.88
1116730--1117081	77	4.6	77	82	5	374	32	15	14	37	1.88
1116733--1117087	153	2.3	153	81	8	414	32	15	14	37	1.88
1117111--1117347	61	4.0	60	85	3	257	32	29	13	24	1.93
1117149--1117354	61	3.4	61	87	2	263	33	30	13	23	1.92
1117111--1117377	61	4.4	60	82	6	249	32	29	13	24	1.93
1118531--1118757	110	2.1	110	82	1	267	24	20	11	44	1.84
1118839--1118883	21	2.2	21	88	4	65	31	6	6	55	1.52
1118846--1118968	51	2.5	49	78	10	133	22	13	7	56	1.61
1118996--1119060	12	5.3	12	74	22	64	18	1	3	76	0.99
1118996--1119060	16	4.0	16	75	16	71	18	1	3	76	0.99
1119001--1119056	20	2.8	19	79	12	60	17	1	3	76	1.01
1121933--1121958	12	2.2	12	100	0	52	57	0	42	0	0.98
1122178--1122243	16	4.1	16	73	13	55	42	6	0	51	1.26
1123183--1123262	36	2.1	36	84	9	97	36	12	7	43	1.71
1123676--1123742	25	2.6	25	83	2	80	53	16	10	19	1.71
1131758--1131798	21	2.0	21	90	0	64	41	2	2	53	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1138381--1138427	21	2.2	21	92	0	85	21	25	17	36	1.94
1138298--1138454	20	7.8	21	76	6	94	30	26	14	28	1.95
1138418--1138469	20	2.6	20	93	0	86	38	26	13	21	1.90
1138471--1138527	18	3.0	19	79	7	53	33	19	14	33	1.91
1139393--1139439	24	2.0	24	86	0	67	34	19	10	36	1.86
1141635--1141670	18	2.0	18	94	0	63	55	25	2	16	1.55
1142068--1142117	25	2.0	25	96	0	91	26	8	22	44	1.80
1142503--1142539	18	2.1	18	89	0	56	32	5	10	51	1.60
1142495--1142547	24	2.2	24	86	0	70	35	3	13	47	1.61
1142741--1142816	35	2.2	35	78	4	82	39	23	13	23	1.90
1142808--1142894	39	2.2	39	97	0	165	47	20	14	17	1.83
1143242--1143382	61	2.2	63	85	8	180	51	17	0	31	1.50
1147052--1147097	20	2.3	20	88	3	67	13	17	21	47	1.81
1147342--1147392	22	2.3	22	82	0	66	27	13	37	21	1.91
1147506--1147574	20	3.4	20	85	2	66	23	20	18	37	1.94
1147520--1147624	20	5.2	20	92	0	165	20	18	22	38	1.94
1147690--1147743	20	2.7	21	77	8	67	29	14	27	27	1.95
1148706--1148829	42	3.2	40	75	18	127	23	7	19	50	1.72
1148740--1148815	34	2.2	34	97	0	143	25	6	19	48	1.73
1149120--1149193	38	1.9	38	94	0	130	29	16	20	33	1.94
1152911--1152969	24	2.5	24	86	8	86	6	18	38	35	1.78
1153070--1153104	9	4.0	9	85	7	54	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1153071--1153104	17	2.0	17	94	0	59	55	0	0	44	0.99
1153464--1153499	17	2.1	17	100	0	72	27	16	11	44	1.82
1153470--1153508	17	2.3	17	90	0	60	23	20	7	48	1.75
1153324--1153648	157	2.1	157	90	1	508	28	21	15	35	1.94
1153481--1153765	140	2.0	140	86	2	394	28	22	16	32	1.95
1154040--1154077	20	1.9	20	100	0	76	26	34	26	13	1.93
1156101--1156160	23	2.6	22	89	7	93	21	31	21	25	1.98
1156101--1156182	23	3.7	23	84	11	82	21	30	23	24	1.99
1158120--1158159	16	2.5	16	95	0	71	20	0	30	50	1.49
1160529--1160586	20	2.6	22	79	20	68	31	20	25	22	1.98
1161209--1161268	23	2.6	23	91	0	93	21	28	25	25	1.99
1162286--1162421	65	2.1	64	84	4	175	27	22	17	32	1.96
1169009--1169049	13	3.2	12	80	12	55	19	43	21	14	1.87
1169982--1170022	18	2.3	18	86	0	55	53	2	17	26	1.56
1171123--1171238	24	4.8	24	89	0	169	25	15	18	39	1.91
1172470--1172515	23	2.0	23	82	4	56	32	23	21	21	1.98
1174012--1174071	30	2.0	31	83	3	77	38	25	5	31	1.77
1175770--1175843	21	3.5	20	75	8	67	29	17	20	32	1.95
1175729--1175843	44	2.7	43	82	5	133	31	18	19	31	1.95
1175741--1175823	23	3.7	23	72	6	71	30	16	20	32	1.95
1177391--1177442	27	1.9	27	88	0	77	25	1	26	46	1.63
1177728--1177760	12	2.6	13	85	9	50	42	9	6	42	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1178075--1178230	65	2.4	65	86	3	208	27	22	18	31	1.97
1179942--1179976	18	2.1	17	89	10	54	71	5	2	20	1.19
1180894--1180920	2	13.5	2	100	0	54	0	0	48	51	1.00
1181137--1181216	31	2.4	32	84	12	92	50	0	6	43	1.27
1184886--1184935	16	3.2	16	77	8	50	50	4	4	42	1.40
1188756--1188801	15	3.0	15	76	23	51	58	4	4	32	1.37
1189510--1189568	23	2.6	23	80	0	55	38	10	16	33	1.83
1189482--1189727	84	2.9	87	93	4	428	40	11	15	32	1.84
1189603--1189652	23	2.2	23	92	0	82	38	8	22	32	1.83
1189722--1190643	201	4.6	199	82	6	1068	31	14	14	39	1.86
1194467--1196236	201	8.8	201	86	2	2334	32	16	13	37	1.87
1194467--1196236	400	4.4	402	88	2	2318	32	16	13	37	1.87
1194467--1196235	601	2.9	600	91	2	2687	32	16	13	37	1.87
1196237--1196275	15	2.6	15	87	0	51	35	7	17	38	1.79
1197544--1197584	3	13.7	3	84	0	55	31	29	2	36	1.71
1198404--1198449	2	23.0	2	100	0	92	50	0	0	50	1.00
1199092--1200250	200	5.8	198	82	5	1226	32	16	14	37	1.88
1199093--1200250	401	2.9	398	82	5	1329	32	16	14	37	1.88
1200599--1200647	19	2.6	19	96	0	89	55	10	2	32	1.45
1202145--1202200	18	3.1	18	94	0	94	3	39	0	57	1.16
1202452--1202495	21	2.1	21	95	0	79	13	34	11	40	1.81
1202883--1202938	24	2.4	23	80	8	69	51	3	0	44	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1204244--1204314	20	3.6	20	66	9	56	33	15	1	49	1.54
1204903--1205393	182	2.7	181	89	0	714	27	17	13	41	1.87
1206031--1206072	18	2.3	19	87	4	59	47	4	4	42	1.45
1206599--1206678	29	2.8	29	96	0	142	45	13	11	30	1.79
1215107--1215193	44	2.0	44	95	0	156	17	25	19	37	1.93
1215353--1215498	60	2.4	60	82	0	166	23	33	26	16	1.96
1219327--1219361	16	2.2	16	94	0	61	28	31	5	34	1.81
1221201--1221373	90	1.9	91	85	5	244	29	18	23	28	1.98
1227871--1227913	20	2.2	20	83	8	52	37	2	2	58	1.24
1237489--1237535	21	2.3	20	82	13	60	17	12	2	68	1.31
1237566--1237626	23	2.6	24	80	12	65	19	18	9	52	1.72
1238337--1238380	22	2.0	22	95	0	79	40	2	0	56	1.11
1240052--1240126	36	2.1	36	85	5	98	46	1	4	48	1.29
1240103--1240149	17	2.7	18	74	12	53	51	4	2	42	1.33
1240270--1240307	20	1.9	20	88	0	58	21	26	10	42	1.85
1241057--1241425	176	2.1	175	87	7	527	46	8	2	41	1.50
1246815--1246862	3	16.3	3	82	4	53	58	0	4	37	1.18
1247099--1247157	19	3.0	21	69	23	63	20	20	11	47	1.81
1247205--1247483	136	2.1	128	86	7	380	27	21	17	33	1.96

Tables:   1   2   3   4   5   6

The End!