genome.fa.s9584.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009584.1 Hibiscus syriacus cultivar Beakdansim tig00116961_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2003061

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 921 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
223077--223114	12	3.2	12	88	0	58	50	18	5	26	1.68
241672--241712	21	2.1	19	86	9	55	26	19	21	31	1.97
245092--245124	16	2.0	17	88	5	50	51	0	15	33	1.43
248782--249318	270	1.9	277	84	6	725	40	5	12	40	1.67
250678--250778	23	4.4	23	78	2	105	33	16	9	39	1.82
254524--254645	60	2.0	61	83	1	156	31	18	13	36	1.89
260474--260499	5	5.2	5	100	0	52	0	19	0	80	0.71
261147--261247	3	33.7	3	93	0	175	65	0	1	31	1.10
261556--261968	140	3.0	140	94	0	693	26	15	29	28	1.96
261987--262426	65	6.8	65	90	1	686	41	13	16	28	1.87
262165--262418	36	7.7	35	65	22	136	41	13	16	28	1.86
262259--262374	29	3.8	29	71	20	94	43	12	13	30	1.82
263054--263411	176	2.0	177	99	0	709	23	18	20	37	1.94
263842--263874	14	2.2	16	89	10	52	30	12	21	36	1.90
272497--272582	31	2.8	31	77	12	95	27	27	31	12	1.93
274432--274465	13	2.5	14	95	4	61	41	14	20	23	1.89
294543--294594	20	2.5	21	77	20	56	30	17	19	32	1.95
301484--301522	21	1.9	20	84	5	51	30	12	20	35	1.90
305051--305326	36	7.6	36	71	11	168	31	24	6	37	1.82
305572--305943	71	5.3	70	70	5	248	34	25	21	18	1.96
305572--305943	142	2.6	142	82	3	437	34	25	21	18	1.96
315841--315871	15	2.1	15	94	5	55	77	0	6	16	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318463--318508	23	2.0	24	83	12	60	47	17	2	32	1.60
322219--322262	20	2.2	20	83	0	52	29	27	22	20	1.99
328099--328220	48	2.6	46	80	10	138	41	7	20	30	1.79
331051--331117	17	3.9	17	83	11	75	77	4	16	1	1.00
331048--331117	18	3.8	19	77	11	83	77	4	17	1	1.01
331047--331115	6	11.3	6	74	9	59	76	4	17	1	1.02
331047--331102	23	2.5	22	85	5	67	78	3	16	1	0.97
331109--331153	17	2.7	16	83	16	56	73	0	15	11	1.10
331080--331140	21	3.0	21	75	20	58	73	1	16	8	1.14
331048--331153	33	3.0	34	82	8	106	74	2	16	5	1.13
336686--336727	14	3.1	14	75	6	50	33	14	30	21	1.93
336661--336727	28	2.4	28	85	2	82	34	11	31	22	1.90
339640--339747	37	2.9	36	83	5	135	31	15	19	33	1.93
342463--342631	36	4.7	36	96	0	302	30	24	27	17	1.97
349205--349648	222	2.0	222	100	0	888	31	16	16	35	1.92
356823--356877	20	2.7	21	77	11	60	63	0	3	32	1.12
356868--356903	2	18.0	2	88	11	56	50	2	0	47	1.15
356839--356909	20	3.4	21	78	18	69	56	1	2	39	1.23
356824--356909	8	11.1	8	72	18	51	59	1	2	37	1.18
357076--357114	18	2.3	16	87	12	60	69	2	0	28	1.02
360313--360368	23	2.4	23	87	0	85	55	5	1	37	1.33
360867--361291	45	9.5	45	85	1	550	35	23	20	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360867--361291	179	2.4	180	85	2	552	35	23	20	20	1.96
367797--367836	20	2.0	20	90	0	62	30	35	15	20	1.93
382077--382244	90	1.9	89	89	1	264	44	8	11	36	1.71
399871--399910	20	2.1	18	86	9	53	32	0	2	65	1.06
400247--400276	15	2.1	15	93	6	53	43	3	0	53	1.17
401461--401494	2	17.5	2	93	6	61	50	0	0	50	1.00
406079--406125	3	16.0	3	95	4	87	65	0	0	34	0.93
406336--406651	134	2.4	134	87	2	456	31	19	19	29	1.97
415687--415730	9	4.8	9	80	2	52	15	2	2	79	0.93
418118--418165	20	2.4	20	96	0	87	25	8	18	47	1.76
418694--418723	14	2.2	14	94	5	53	86	0	13	0	0.57
420211--420480	147	1.8	146	87	5	402	48	7	7	37	1.57
420610--420654	22	2.1	22	88	12	67	66	4	0	28	1.11
422098--422183	3	28.0	3	88	4	127	62	0	1	36	1.03
422309--422477	45	3.8	45	92	3	286	34	18	22	24	1.96
422309--422476	90	1.9	90	97	0	318	34	18	22	24	1.96
423089--423145	22	2.6	22	94	0	96	36	15	14	33	1.88
423944--424441	243	2.0	245	97	1	948	36	18	16	28	1.93
426791--426843	21	2.5	21	93	0	88	20	26	9	43	1.82
431286--431314	2	14.5	2	100	0	58	51	0	0	48	1.00
431844--432126	148	1.9	150	85	7	398	48	5	6	38	1.53
435374--435449	39	1.9	39	89	0	116	18	19	39	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435701--436053	139	2.5	137	85	3	456	28	17	13	39	1.88
435971--436399	124	3.6	122	79	9	381	25	19	15	39	1.90
435971--436411	123	3.7	122	79	9	403	26	19	15	39	1.91
436460--436766	73	4.2	73	88	2	436	31	21	19	27	1.98
437453--437510	22	2.6	22	88	0	89	39	12	17	31	1.86
437817--437971	55	2.9	54	76	1	148	27	23	14	34	1.94
444270--444343	38	1.9	39	83	2	96	32	20	13	33	1.91
446184--446225	22	2.0	22	86	9	61	38	0	0	61	0.96
446347--446395	18	2.7	19	77	22	52	53	0	4	42	1.20
446645--446683	12	3.3	12	82	3	53	69	5	2	23	1.21
446642--446704	23	3.1	19	75	18	54	66	3	4	25	1.26
449012--449051	3	13.0	3	89	5	62	65	0	0	35	0.93
449012--449048	19	1.9	19	94	0	65	64	0	0	35	0.94
455817--455936	53	2.2	55	94	2	208	65	5	7	20	1.39
458484--458671	94	2.0	94	93	2	324	27	19	12	40	1.87
461517--461563	18	2.6	19	83	10	62	63	4	4	27	1.31
466295--466340	25	1.9	24	86	8	67	39	4	4	52	1.41
466712--466751	21	1.9	21	89	0	62	10	25	40	25	1.86
466732--466794	20	2.9	21	79	9	65	15	25	34	23	1.95
474947--474989	15	2.8	15	96	3	77	20	32	0	46	1.51
476129--476167	15	2.3	18	75	25	57	48	15	20	15	1.81
476134--476168	15	2.3	15	100	0	70	54	17	17	11	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
482690--482736	3	16.0	3	95	4	87	65	0	0	34	0.93
484158--484216	26	2.3	26	90	0	91	37	16	1	44	1.59
484180--484237	26	2.3	25	84	3	71	29	27	6	36	1.83
485351--485411	32	1.9	32	96	0	113	16	32	13	37	1.87
493304--493364	14	4.7	14	79	18	62	60	0	37	1	1.07
493317--493368	25	2.2	25	86	10	74	65	0	32	1	1.04
493610--493667	6	9.5	6	84	3	71	17	5	3	74	1.15
494982--495432	45	10.2	45	87	5	582	20	20	13	44	1.86
495281--495356	36	2.1	36	92	0	125	21	22	15	40	1.90
495192--495432	125	1.9	126	88	2	369	22	20	13	43	1.86
495244--495401	81	2.0	80	87	1	226	21	20	13	43	1.87
495766--495966	95	2.1	96	82	4	237	25	21	13	39	1.90
500890--501660	135	5.7	134	86	2	947	28	20	15	35	1.93
500896--501663	269	2.8	268	85	3	961	28	20	15	35	1.93
502903--503068	54	3.1	54	82	3	172	39	18	12	28	1.88
505406--505456	26	2.0	26	92	7	86	19	15	21	43	1.88
506357--506426	14	4.9	14	80	1	68	30	17	28	24	1.97
506360--506426	28	2.3	29	89	2	100	28	16	29	25	1.97
509775--509846	30	2.4	29	81	6	83	43	6	16	33	1.75
511530--511561	15	2.1	15	100	0	64	34	18	0	46	1.49
518744--518877	22	6.1	21	79	13	114	79	1	15	3	0.95
518744--518878	6	24.0	6	70	18	103	78	1	16	3	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
518744--518877	16	8.7	15	75	16	114	79	1	15	3	0.95
523356--523393	3	12.0	3	89	10	58	63	2	0	34	1.09
530667--530892	111	2.0	111	88	2	330	24	13	17	44	1.85
532472--532518	15	2.9	15	80	17	58	57	29	2	10	1.44
532476--532519	18	2.4	18	81	7	54	56	31	2	9	1.43
534154--534206	23	2.3	23	83	0	79	26	24	28	20	1.99
541042--541094	23	2.3	23	86	0	70	30	26	26	16	1.97
541057--541101	23	2.0	23	95	0	81	24	26	28	20	1.99
554778--554828	22	2.3	22	76	10	59	39	23	9	27	1.86
556612--556648	19	1.9	19	89	10	58	35	2	24	37	1.70

Tables:   1   2   3   4   5   6   7   8