genome.fa.s9584.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009584.1 Hibiscus syriacus cultivar Beakdansim tig00116961_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2003061

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 921 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1818775--1818830	19	2.8	20	86	5	78	41	12	10	35	1.78
1821189--1821222	16	2.1	17	88	5	52	73	0	8	17	1.08
1821178--1821302	36	3.5	37	71	21	95	67	1	6	24	1.23
1821178--1821304	38	3.5	38	71	21	103	66	1	6	25	1.23
1821240--1821302	17	3.5	17	70	19	56	65	1	6	26	1.26
1821336--1821427	2	48.0	2	87	8	129	53	1	0	45	1.07
1821380--1821483	19	5.4	18	73	18	66	61	0	2	35	1.11
1822853--1823326	106	4.5	105	84	2	519	21	17	24	36	1.94
1824000--1824320	65	4.8	65	75	10	252	39	11	19	29	1.87
1823974--1824170	65	2.9	67	83	5	222	37	10	22	29	1.87
1824131--1824356	36	6.4	36	78	10	234	39	13	19	27	1.89
1824143--1824241	37	2.7	36	87	3	144	41	16	21	21	1.90
1824077--1824340	138	1.9	138	88	0	402	40	13	20	26	1.89
1824165--1824431	101	2.6	100	83	2	300	38	13	18	29	1.89
1825911--1826042	69	1.9	69	88	0	201	25	15	20	37	1.92
1826115--1826161	12	3.8	12	81	10	51	2	14	4	78	0.99
1826115--1826161	13	3.8	13	84	15	64	2	14	4	78	0.99
1826114--1826163	25	2.0	25	92	7	84	4	14	4	78	1.05
1827390--1827430	7	5.7	7	94	5	73	56	14	14	14	1.69
1829341--1829377	13	2.8	13	87	0	56	86	2	0	10	0.67
1829563--1829587	13	1.9	13	100	0	50	80	0	8	12	0.92
1829568--1829624	16	3.2	18	73	12	55	73	0	3	22	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1829557--1829693	17	8.2	17	66	22	60	66	0	5	27	1.19
1829724--1829773	25	1.9	27	88	8	77	56	0	4	40	1.18
1829743--1829782	14	2.7	14	92	7	62	62	0	2	35	1.09
1829797--1829821	12	2.1	12	100	0	50	76	0	0	24	0.80
1831673--1831790	47	2.4	50	81	5	134	27	14	19	38	1.91
1831709--1831837	51	2.5	49	81	10	152	27	13	18	40	1.89
1832042--1832096	28	2.0	28	96	0	101	36	23	16	23	1.94
1839803--1839848	23	2.0	23	82	0	56	17	26	21	34	1.95
1839834--1839886	21	2.5	22	78	9	65	16	20	30	32	1.95
1846860--1846920	23	2.6	24	84	7	81	14	24	22	37	1.92
1846889--1846958	21	3.2	21	79	6	68	20	21	24	34	1.97
1848143--1848202	31	1.9	31	86	6	86	33	11	23	31	1.91
1853430--1853475	3	15.3	3	90	0	74	36	0	30	32	1.58
1868933--1869261	179	1.9	176	82	5	421	41	10	9	39	1.72
1872874--1872912	20	2.0	20	84	0	51	38	5	10	46	1.60
1873919--1873951	17	1.9	17	88	11	50	33	3	0	63	1.10
1874141--1874172	17	1.9	17	93	6	57	34	0	0	65	0.93
1873749--1874208	224	2.1	224	84	8	643	43	5	5	45	1.48
1881006--1881076	35	2.0	36	94	5	128	18	36	2	42	1.65
1888285--1888345	31	2.0	31	86	0	86	19	11	9	59	1.60
1896269--1896337	24	2.9	24	84	0	93	23	13	13	50	1.75
1896496--1896522	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1897482--1897588	30	3.6	30	77	9	110	40	10	9	40	1.71
1897482--1897588	29	3.6	29	81	6	115	40	10	9	40	1.71
1897669--1897766	29	3.4	27	79	10	88	40	10	7	41	1.66
1897888--1897912	2	12.5	2	100	0	50	48	0	0	52	1.00
1900187--1900215	2	14.5	2	100	0	58	48	0	0	51	1.00
1907798--1907891	47	2.0	47	100	0	188	27	19	10	42	1.84
1913686--1913785	2	50.5	2	93	2	175	48	1	1	50	1.14
1913871--1913904	8	4.0	8	88	11	50	70	2	2	23	1.15
1914318--1914363	20	2.3	21	81	11	60	50	17	15	17	1.79
1915743--1916343	299	2.0	299	100	0	1202	27	21	14	36	1.92
1917930--1917954	2	12.5	2	100	0	50	48	0	0	52	1.00
1917952--1920247	4	582.8	4	96	3	4290	25	0	25	49	1.51
1920251--1920337	45	1.9	46	88	2	131	20	13	20	44	1.85
1921586--1921635	19	2.5	20	87	3	66	46	6	14	34	1.69
1923430--1923490	24	2.5	24	81	5	70	29	24	14	31	1.95
1924578--1924625	15	3.1	15	79	5	60	68	0	14	16	1.21
1925986--1926015	15	2.0	15	100	0	60	33	20	20	26	1.97
1939693--1939735	21	2.0	21	100	0	86	9	25	9	55	1.61
1941251--1941306	24	2.3	24	78	0	67	10	10	17	60	1.57
1943678--1943710	2	17.0	2	93	6	59	48	0	0	51	1.00
1944759--1944795	2	18.5	2	100	0	74	51	0	0	48	1.00
1950063--1950143	26	3.2	26	65	25	73	34	24	6	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1950061--1950162	50	2.0	50	100	0	204	35	23	5	35	1.79
1950084--1950163	26	3.2	26	64	25	71	36	22	5	36	1.76
1954652--1954698	22	2.1	22	100	0	94	31	8	17	42	1.79
1954840--1954870	12	2.6	12	94	0	53	12	6	9	70	1.31
1955798--1955844	2	23.5	2	91	8	78	48	0	2	48	1.13
1961370--1961469	3	33.7	3	95	2	184	33	1	0	66	0.99
1966616--1966776	63	2.5	63	83	9	186	33	17	22	26	1.96
1967105--1967279	59	3.0	59	77	6	169	36	10	21	30	1.88
1967304--1967416	59	1.9	59	89	3	174	35	12	19	32	1.89
1967304--1967442	59	2.4	59	83	7	149	36	11	20	30	1.89
1968004--1968047	23	2.0	23	86	4	63	25	20	13	40	1.89
1981498--1981608	52	2.1	52	83	3	134	30	6	18	44	1.75
1982509--1982588	40	2.0	40	85	0	106	17	26	27	28	1.98
1994883--1994913	16	1.9	16	100	0	62	38	29	6	25	1.81
1998691--1998721	2	15.5	2	100	0	62	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8

The End!