genome.fa.s9614.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009614.1 Hibiscus syriacus cultivar Beakdansim tig00117000_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2129691

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1149 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2035294--2035329	13	2.8	13	91	4	56	38	0	44	16	1.48
2036046--2036122	22	3.5	22	77	12	86	29	25	19	24	1.98
2041913--2042109	65	3.0	63	80	10	220	26	18	22	31	1.97
2042397--2042428	17	1.9	17	93	6	57	40	12	12	34	1.81
2044455--2044491	2	19.0	2	94	5	67	48	0	0	51	1.00
2045518--2045576	23	2.6	23	86	0	82	20	27	25	27	1.99
2045518--2045584	23	2.9	22	82	4	71	20	25	23	29	1.99
2045923--2045970	24	1.9	26	83	8	64	39	2	20	37	1.65
2046987--2047035	21	2.3	21	100	0	98	22	26	8	42	1.81
2053188--2053282	35	2.7	35	85	4	129	45	18	1	34	1.57
2053276--2053350	35	2.1	35	82	4	89	33	0	21	45	1.52
2055340--2055461	35	3.4	35	85	2	163	31	0	23	44	1.54
2057587--2057646	20	2.9	21	76	18	54	60	1	3	35	1.23
2060313--2060455	71	2.0	71	98	0	277	30	22	11	35	1.89
2065988--2066064	31	2.5	31	85	10	111	50	5	2	41	1.38
2066969--2067008	21	1.9	21	85	10	55	55	2	0	42	1.13
2066978--2067019	22	2.0	22	90	4	68	50	0	0	50	1.00
2067939--2068269	167	2.0	166	96	3	614	40	13	9	36	1.77
2070407--2070510	50	2.1	49	83	5	129	39	10	13	36	1.79
2071781--2072152	185	2.0	184	90	4	581	47	8	2	41	1.47
2072118--2072185	25	2.7	24	77	11	64	45	1	4	48	1.31
2074970--2075090	37	3.3	37	67	17	115	47	2	7	42	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2074966--2075114	74	2.0	74	98	0	289	48	2	9	39	1.50
2076024--2076091	22	3.0	22	95	4	127	26	26	26	20	1.99
2076309--2076368	30	2.0	31	90	3	95	33	23	6	36	1.81
2076383--2076460	29	3.0	26	82	14	106	38	12	7	41	1.72
2076725--2076767	21	2.0	21	86	0	59	16	25	27	30	1.97
2082712--2082786	22	3.5	22	96	1	134	29	26	25	18	1.98
2083005--2083064	30	2.0	31	90	3	95	33	23	6	36	1.81
2083079--2083150	29	2.5	29	93	0	117	38	12	9	38	1.76
2083448--2083596	67	2.3	67	81	9	164	20	26	25	27	1.99
2083577--2083618	20	2.0	21	86	4	59	16	26	26	30	1.97
2084556--2084648	7	13.3	7	73	8	55	22	3	33	40	1.70
2084585--2084648	28	2.3	28	83	0	74	18	1	35	43	1.60
2084585--2084658	14	5.3	14	73	0	58	17	4	35	43	1.68
2084615--2084654	21	1.9	21	84	0	53	20	5	27	47	1.70
2087266--2087331	32	2.1	32	85	5	89	51	4	6	37	1.47
2087286--2087331	16	2.8	17	83	9	69	47	6	6	39	1.55
2087460--2087821	2	174.5	2	63	23	65	46	8	3	41	1.50
2087466--2087821	9	40.3	9	67	23	106	46	8	3	41	1.51
2087491--2087821	11	33.3	10	66	25	61	46	8	3	41	1.50
2087756--2087820	24	2.7	24	85	7	87	47	9	1	41	1.45
2087930--2087981	23	2.3	23	86	0	68	48	1	3	46	1.31
2087925--2087972	2	23.5	2	87	4	69	47	0	4	47	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2087944--2088070	30	4.2	30	89	5	177	44	4	5	45	1.48
2088051--2088087	14	2.5	15	91	8	58	51	5	5	37	1.48
2087962--2088099	60	2.3	58	79	9	154	46	5	5	43	1.47
2088034--2088280	125	2.0	122	88	4	363	46	5	3	44	1.44
2088080--2088375	54	5.7	53	71	20	204	44	5	4	45	1.47
2088181--2088207	13	2.1	13	100	0	54	44	7	7	40	1.60
2088065--2088231	18	9.3	18	67	19	73	46	4	2	45	1.39
2088053--2088355	125	2.4	125	82	9	316	45	6	4	43	1.48
2088712--2088931	101	2.2	100	84	8	277	35	29	3	31	1.73
2088837--2089043	106	2.0	106	81	7	251	35	34	2	27	1.72
2089086--2089257	52	3.2	52	80	7	168	25	25	3	45	1.69
2089135--2089259	53	2.4	51	82	6	151	25	25	4	44	1.71
2092558--2092615	30	1.9	31	92	3	100	32	0	3	63	1.11
2093617--2093672	16	3.5	16	85	4	69	46	8	12	32	1.73
2094204--2094287	27	3.1	27	98	0	159	25	8	36	29	1.85
2103894--2103952	23	2.8	20	85	10	66	22	35	23	18	1.96
2114960--2115072	41	2.8	40	87	2	163	27	23	17	31	1.97
2117923--2118024	39	2.7	39	80	3	109	36	13	0	49	1.49
2117927--2118043	38	3.1	38	80	2	117	38	13	0	47	1.49
2120230--2120300	31	2.3	31	85	0	97	43	12	9	33	1.76
2120898--2120956	31	1.9	31	89	6	93	33	13	16	35	1.88
2122684--2122856	92	1.9	92	91	2	285	24	20	18	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2123016--2123080	34	1.9	34	84	6	87	47	4	4	43	1.44
2123055--2123175	64	1.9	64	83	6	156	47	2	3	47	1.32
2125083--2125158	36	2.1	36	97	0	143	43	14	10	31	1.79

Tables:   1   2   3   4   5   6   7   8   9   10

The End!