genome.fa.s9614.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009614.1 Hibiscus syriacus cultivar Beakdansim tig00117000_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2129691

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  8  of  10  ( 1149 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1655311--1655363	21	2.5	21	96	0	97	28	20	20	30	1.98
1656145--1656266	61	2.0	61	100	0	244	44	13	21	21	1.86
1658426--1658500	30	2.6	29	85	8	91	37	0	2	60	1.11
1658446--1658510	29	2.2	31	78	15	75	44	1	0	53	1.09
1661487--1661552	23	2.9	23	93	0	114	51	13	12	22	1.74
1661675--1661741	21	3.2	21	83	8	66	38	41	0	19	1.51
1661693--1661743	3	17.0	3	83	0	57	37	39	0	23	1.55
1662157--1662295	29	4.8	29	96	1	253	45	16	20	17	1.86
1662380--1662413	15	2.3	15	89	0	50	14	17	32	35	1.91
1665982--1666016	18	1.9	18	88	0	52	20	17	34	28	1.95
1666894--1667115	4	54.0	4	68	16	89	64	4	5	24	1.35
1666894--1667044	69	2.2	69	91	1	241	64	4	4	25	1.32
1666894--1667044	23	6.6	23	86	0	187	64	4	4	25	1.32
1666990--1667067	19	4.0	20	73	18	65	66	3	5	24	1.29
1670349--1671252	447	2.0	449	93	2	1564	28	27	22	21	1.99
1676561--1676586	2	13.0	2	100	0	52	50	0	0	50	1.00
1677128--1677180	19	2.8	19	100	0	106	50	22	16	9	1.74
1677127--1677303	21	8.8	20	74	6	81	39	24	17	18	1.91
1677271--1677463	20	9.6	20	83	5	237	35	27	18	18	1.94
1677843--1677913	33	2.2	33	94	0	124	9	23	19	46	1.80
1677993--1678069	21	3.7	21	81	6	102	48	16	22	12	1.80
1678047--1678126	33	2.4	33	93	0	133	47	21	21	10	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1678054--1678110	14	3.7	14	70	20	51	43	21	24	10	1.83
1678122--1678249	19	7.1	19	71	19	87	10	25	18	45	1.82
1678144--1678200	14	3.7	14	75	20	60	8	24	22	43	1.81
1678127--1678249	33	3.5	33	88	10	165	10	24	18	46	1.81
1678185--1678249	21	3.1	21	82	4	96	10	26	15	47	1.78
1680536--1680560	12	2.1	12	100	0	50	0	28	0	72	0.86
1681473--1681658	20	9.3	20	86	4	223	19	17	26	35	1.95
1682174--1682403	20	11.4	20	83	6	241	19	17	25	36	1.94
1683339--1683385	21	2.2	21	84	0	67	19	27	17	36	1.93
1683381--1683512	20	6.6	20	82	3	149	37	19	20	22	1.95
1684061--1684142	34	2.4	34	93	0	146	39	20	21	18	1.93
1684116--1684164	20	2.5	20	86	0	71	34	24	20	20	1.96
1684177--1684243	20	3.4	20	87	2	100	11	16	22	49	1.78
1684208--1684251	20	2.2	20	87	0	61	13	13	20	52	1.74
1685962--1686002	21	1.9	21	85	5	55	26	14	14	43	1.84
1686122--1686205	20	4.5	20	77	17	99	38	21	20	20	1.94
1686122--1686226	54	1.9	54	92	0	174	40	20	20	18	1.91
1686252--1686298	20	2.3	20	88	0	67	21	19	23	36	1.95
1686272--1686362	33	2.7	34	79	3	112	13	19	21	45	1.85
1686802--1686888	21	4.1	21	74	0	84	20	36	19	22	1.95
1686810--1686892	42	2.0	42	83	4	105	21	38	19	20	1.93
1688245--1688280	14	2.6	14	90	0	54	30	0	22	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1688386--1688481	33	2.8	33	90	3	138	13	22	20	42	1.87
1688453--1688541	20	4.5	19	83	8	115	19	19	24	37	1.94
1691886--1692028	20	7.1	20	78	9	157	23	19	18	38	1.93
1697734--1697792	19	3.2	19	72	13	68	35	13	5	45	1.66
1697721--1697792	37	1.9	37	100	0	144	40	11	5	43	1.64
1697721--1697777	18	3.1	18	71	14	62	43	8	5	42	1.58
1705071--1705113	19	2.2	20	91	4	70	23	34	0	41	1.55
1716432--1716511	20	4.0	20	77	3	88	13	22	22	41	1.89
1716604--1716636	6	5.7	6	96	3	59	30	51	18	0	1.46
1717127--1717156	6	5.0	6	95	0	51	0	16	63	20	1.31
1717254--1717300	19	2.5	19	92	0	85	46	17	17	19	1.84
1717316--1717385	20	3.5	20	73	9	70	35	24	20	20	1.96
1729967--1730084	32	3.7	31	82	11	159	33	18	17	30	1.95
1729946--1730140	31	6.2	32	78	12	201	31	18	18	30	1.96
1729946--1730101	63	2.5	63	96	0	294	33	17	18	30	1.95
1735855--1735913	21	2.8	22	79	5	59	76	0	11	11	1.03
1737932--1738454	33	16.0	33	85	4	697	38	19	21	20	1.93
1737932--1738454	97	5.3	99	84	5	697	38	19	21	20	1.93
1738457--1738591	44	3.1	43	67	4	108	30	22	20	27	1.98
1738420--1738591	88	2.0	88	86	0	245	31	21	19	26	1.97
1740192--1740248	2	29.0	2	92	3	98	49	1	0	49	1.11
1742242--1742282	21	1.9	22	85	5	57	34	19	19	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1744853--1744904	21	2.5	21	81	3	61	40	17	25	17	1.90
1744893--1745026	20	6.7	20	83	5	135	32	24	17	25	1.97
1745589--1745748	19	8.8	19	73	15	133	12	23	20	44	1.85
1745589--1745723	33	3.9	33	86	5	144	11	23	21	42	1.86
1745691--1745748	20	2.9	20	75	10	55	13	22	18	44	1.85
1747325--1747509	91	2.0	89	88	6	271	22	12	17	47	1.82
1747742--1747934	42	4.6	42	78	2	183	21	35	19	23	1.96
1747868--1747934	21	3.2	21	66	6	55	23	35	20	19	1.95
1747729--1747904	84	2.1	84	96	0	325	20	36	17	25	1.94
1747729--1747934	84	2.5	84	89	1	261	21	35	18	24	1.95
1749289--1749324	14	2.6	14	95	0	63	30	0	25	44	1.54
1749449--1749505	14	3.7	14	72	20	51	45	22	22	8	1.80
1749431--1749520	33	2.7	33	92	0	144	44	21	21	13	1.85
1749431--1749491	19	3.5	19	74	21	69	44	21	22	11	1.84
1749516--1749646	19	7.7	19	67	23	103	15	22	19	42	1.88
1749520--1749646	33	3.9	32	85	8	184	15	22	18	42	1.89
1749513--1749645	66	2.0	66	95	0	239	17	22	18	41	1.90
1751932--1751956	12	2.1	12	100	0	50	0	28	0	72	0.86
1752131--1752184	24	2.2	24	86	0	72	40	18	16	24	1.90
1753012--1753061	20	2.5	20	76	0	64	38	20	18	24	1.93
1753275--1753362	20	4.4	20	74	5	88	39	21	20	18	1.92
1753394--1753447	14	3.5	14	77	22	63	11	20	20	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1753376--1753446	33	2.1	34	79	7	83	19	18	21	40	1.91
1753554--1753590	14	2.6	14	86	0	56	48	21	0	29	1.50
1755453--1755520	20	3.5	19	78	6	64	38	20	23	17	1.93
1755509--1755566	14	3.9	14	79	16	71	48	24	17	10	1.78
1755493--1755571	32	2.4	33	95	2	142	46	22	18	11	1.81
1755578--1755659	18	4.6	19	75	17	95	14	20	19	45	1.85
1755578--1755679	33	2.8	35	76	22	95	14	22	20	42	1.89
1755644--1755698	20	2.8	19	83	8	65	16	23	23	36	1.94
1756174--1756218	18	2.5	18	88	0	72	13	15	44	26	1.83
1757539--1757581	20	2.2	20	86	0	59	48	20	18	11	1.79
1757549--1757617	20	3.5	20	93	0	111	34	26	18	20	1.96
1757873--1757921	22	2.3	21	89	6	73	24	14	40	20	1.89
1758112--1758163	20	2.6	20	87	0	77	26	21	26	25	1.99
1758173--1758232	30	2.0	30	96	0	111	25	21	23	30	1.99
1758306--1758346	21	2.0	21	85	0	55	34	29	17	19	1.94
1760029--1760148	62	1.9	63	83	5	154	43	4	0	51	1.26
1764433--1764492	18	3.2	18	80	4	66	46	0	3	50	1.18
1764687--1764900	55	3.9	55	84	4	252	28	24	14	32	1.94
1764699--1764900	110	1.8	110	84	2	280	29	23	14	32	1.94
1764911--1765542	54	11.7	54	86	1	818	21	25	18	34	1.96
1767034--1767291	125	2.1	125	88	1	383	24	27	17	30	1.97
1768531--1768592	26	2.5	26	76	10	67	6	19	1	72	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1768531--1768598	27	2.7	25	74	14	59	5	20	1	72	1.14
1768810--1768856	2	23.5	2	100	0	94	48	0	0	51	1.00
1771251--1771358	21	5.0	22	84	5	91	14	19	21	44	1.86
1771192--1771347	21	7.4	21	89	2	208	16	16	21	45	1.85
1775355--1775414	18	3.2	18	80	4	66	46	0	3	50	1.18
1776920--1776976	23	2.5	23	82	0	69	43	8	12	35	1.73
1776815--1777327	87	6.0	86	88	4	718	44	10	12	32	1.76
1777016--1777066	23	2.2	23	85	0	66	41	7	17	33	1.79
1777094--1777153	23	2.6	23	81	5	68	41	8	15	35	1.77
1777178--1777232	23	2.4	23	84	0	83	47	9	12	30	1.73

Tables:   1   2   3   4   5   6   7   8   9   10