genome.fa.s9621.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009621.1 Hibiscus syriacus cultivar Beakdansim tig00117010_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  839111

Tables:   1   2   3   4   

This is table  2  of  4  ( 451 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
245333--245422	19	4.9	19	75	15	91	46	21	21	11	1.81
245389--245428	19	2.1	19	90	0	62	50	25	17	7	1.72
245526--245901	94	4.1	94	93	2	611	47	19	11	21	1.81
247495--247649	19	8.8	19	65	24	81	44	18	23	14	1.85
247523--247649	33	3.8	33	92	1	173	42	19	23	14	1.88
247547--247632	14	5.4	14	68	24	55	41	20	25	11	1.86
247666--247734	20	3.8	19	70	20	67	11	23	21	43	1.85
248076--248207	20	6.5	21	92	3	166	18	21	18	40	1.92
248078--248207	61	2.2	60	84	4	172	18	22	19	40	1.92
248217--248272	20	2.8	20	94	0	94	42	21	17	17	1.89
248301--248352	20	2.5	21	87	3	70	21	23	17	38	1.93
248342--248394	21	2.5	22	75	6	65	35	18	24	20	1.95
248158--248476	143	2.2	142	78	8	328	30	18	21	29	1.97
250548--250598	21	2.5	21	83	3	68	27	21	13	37	1.91
250594--250640	20	2.3	20	85	0	58	34	23	17	25	1.96
250631--250679	20	2.5	20	100	0	98	48	24	10	16	1.76
250673--250713	19	2.1	20	86	4	57	24	19	14	41	1.89
251202--251245	20	2.2	20	91	0	70	50	22	18	9	1.75
251208--251250	20	2.2	20	91	0	68	48	20	20	9	1.77
251247--251367	19	6.4	18	83	6	125	13	22	17	47	1.82
251257--251362	38	2.8	38	94	0	176	12	24	16	47	1.80
253383--253465	21	4.0	21	77	0	85	22	34	16	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
253387--253480	42	2.2	42	86	3	127	22	36	19	22	1.95
253410--253484	21	3.7	20	75	10	71	20	37	20	22	1.94
254676--254708	13	2.4	14	95	5	59	30	0	21	48	1.50
254676--254849	78	2.3	78	90	2	280	30	1	17	50	1.56
254753--254786	14	2.4	14	95	0	59	35	0	17	47	1.48
254948--255022	20	3.8	20	90	0	114	40	25	18	16	1.91
257583--257636	24	2.2	24	93	0	90	40	20	14	24	1.90
257596--257647	24	2.2	24	82	0	59	38	17	11	32	1.85
258574--258657	20	4.3	20	74	14	77	36	16	17	28	1.92
258662--258699	20	1.9	20	88	0	58	28	15	26	28	1.96
260229--260738	3	171.0	3	96	2	949	0	67	0	32	0.95
264439--264474	3	12.0	3	93	0	63	33	36	0	30	1.58
264473--264583	3	37.3	3	98	1	215	33	0	0	66	0.92
268299--268438	31	4.5	31	79	3	165	24	7	12	55	1.64
271022--271064	17	2.5	17	96	0	77	37	16	20	25	1.93
271906--271939	17	2.0	17	94	0	59	26	11	20	41	1.87
273247--273276	15	2.0	15	93	0	51	50	26	10	13	1.73
274268--274332	24	2.5	26	76	14	64	55	9	3	32	1.47
274418--274464	23	2.1	23	96	4	87	31	25	10	31	1.90
275017--275326	43	7.2	42	81	1	323	34	21	20	23	1.97
275035--275326	129	2.3	129	85	4	367	34	20	21	23	1.97
276419--276449	16	1.9	16	100	0	62	45	29	6	19	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
278668--279136	41	11.4	41	77	7	378	36	17	18	27	1.93
278652--279097	83	5.4	83	78	8	383	36	17	18	26	1.93
279026--279157	40	3.3	40	82	3	122	27	17	20	34	1.95
284205--284358	29	5.3	29	79	6	177	38	7	0	53	1.35
284192--284358	60	2.8	59	81	6	196	37	7	0	53	1.34
286108--286134	14	1.9	14	100	0	54	62	0	14	22	1.31
289055--289085	5	6.0	5	92	7	53	19	19	38	22	1.93
298530--298578	2	25.0	2	95	4	91	51	0	0	48	1.00
300040--300275	112	2.1	112	93	1	402	28	12	12	46	1.78
300361--301522	73	15.9	73	85	4	1429	34	13	11	40	1.80
300361--301531	147	8.0	147	85	5	1482	35	13	11	40	1.80
307536--307610	24	3.2	24	82	1	62	38	21	14	25	1.91
307546--307647	24	4.3	23	80	5	78	39	17	14	28	1.89
312549--312586	19	2.1	18	85	9	51	44	2	10	42	1.52
312821--312901	30	2.7	31	75	5	85	28	9	6	55	1.56
322452--322498	18	2.5	19	93	3	78	53	2	0	44	1.12
322685--322735	21	2.4	21	72	18	52	39	13	15	31	1.87
323391--323415	5	5.0	5	100	0	50	40	0	20	40	1.52
324112--324208	35	2.7	36	82	7	126	29	1	25	43	1.62
325483--325660	34	5.1	35	75	16	122	44	3	7	43	1.51
325401--325660	35	7.3	33	72	20	145	43	5	7	43	1.54
326503--326546	22	2.0	22	86	4	61	20	2	0	77	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
334159--334294	5	28.0	5	65	21	51	22	3	1	72	1.08
334155--334193	13	3.0	13	80	0	51	17	0	2	79	0.84
334211--334244	13	2.6	13	90	0	50	20	2	0	76	0.92
336031--336062	7	4.6	7	96	0	55	21	12	3	62	1.43
337271--337344	6	11.8	6	74	18	53	79	4	14	1	0.94
337276--337343	7	9.6	7	78	13	59	80	2	14	1	0.89
337282--337330	24	2.1	24	88	3	73	81	2	16	0	0.78
337289--337353	23	3.0	22	76	17	64	78	4	15	1	0.99
337954--338002	22	2.2	22	88	0	71	36	26	8	28	1.85
338416--338451	18	2.0	18	88	0	54	19	8	30	41	1.81
338969--340130	106	11.0	106	94	0	1955	33	25	18	22	1.97
341627--341665	13	3.0	13	84	0	60	15	0	2	82	0.79
341644--341764	13	9.4	12	69	21	52	23	4	0	71	1.09
346736--347689	149	6.6	148	81	9	950	20	34	21	24	1.97
346889--347087	46	4.4	45	66	17	115	21	35	21	22	1.96
346897--347694	137	5.7	137	82	8	834	20	34	21	24	1.97
346741--347720	286	3.4	282	82	8	1085	20	34	21	24	1.97
348639--348755	52	2.2	52	83	4	146	41	11	17	29	1.85
349164--349208	17	2.6	18	82	13	58	62	6	0	31	1.21
349163--349208	18	2.6	18	83	13	60	63	6	0	30	1.20
352355--352393	16	2.5	16	87	4	53	33	20	7	38	1.81
354650--354691	10	4.3	10	78	6	50	64	16	19	0	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355755--355797	20	2.2	19	84	12	52	32	0	0	67	0.91
368244--368289	23	2.1	21	84	8	56	54	0	4	41	1.20
368447--368484	20	1.9	20	88	0	58	21	26	10	42	1.85
372005--372036	12	2.7	12	95	0	55	18	12	46	21	1.82
372033--372093	2	31.5	2	80	6	72	50	0	0	49	1.00
372196--372263	35	1.9	35	96	0	127	19	36	11	32	1.88
374489--374532	21	2.1	21	91	0	70	59	0	0	40	0.98
378400--378431	16	2.0	16	93	0	55	34	0	25	40	1.56
378770--378798	12	2.4	12	100	0	58	6	17	48	27	1.72
383821--383883	29	2.2	29	82	5	74	65	1	15	17	1.36
384014--384055	16	2.5	17	88	3	59	76	0	7	16	1.00
384041--384102	16	3.9	17	71	28	64	62	1	1	33	1.14
384129--384156	2	14.0	2	100	0	56	50	0	0	50	1.00
385637--385843	110	1.9	110	90	0	333	21	18	24	35	1.96
386883--386912	9	3.3	9	95	0	51	16	13	0	70	1.18
386950--386974	10	2.5	10	100	0	50	0	0	8	92	0.40
399324--399386	29	2.2	29	82	5	74	63	1	15	19	1.39
399533--399567	2	17.5	2	93	0	61	48	2	0	48	1.16
400763--400806	3	14.7	3	90	0	52	59	0	9	31	1.29
402635--402705	19	3.7	19	94	0	115	33	16	26	22	1.96
421382--421434	20	2.7	20	84	0	61	32	22	26	18	1.97
421537--421613	21	3.7	21	94	0	136	23	19	36	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424957--425019	21	3.0	21	79	9	76	28	28	22	20	1.98
425093--425138	21	2.2	21	88	7	67	26	21	32	19	1.97
425218--425275	30	2.0	29	90	10	91	44	17	5	32	1.70
425218--425277	29	2.0	30	93	6	104	43	16	6	33	1.74
428164--428224	28	2.2	28	88	5	97	57	0	0	42	0.98
445856--445928	35	2.1	35	87	5	103	31	0	21	46	1.52
447819--447864	19	2.4	19	100	0	92	52	8	26	13	1.69
447819--447892	19	3.9	19	84	7	55	45	5	25	22	1.73
460564--460620	3	18.7	3	74	3	51	43	0	0	56	0.99
462332--462373	13	2.9	16	86	13	56	45	0	0	54	0.99

Tables:   1   2   3   4