genome.fa.s9621.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009621.1 Hibiscus syriacus cultivar Beakdansim tig00117010_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  839111

Tables:   1   2   3   4   

This is table  4  of  4  ( 451 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
682786--682814	2	14.5	2	100	0	58	48	0	0	51	1.00
683132--683192	31	2.0	31	87	3	88	32	26	16	24	1.96
683141--683205	31	2.1	31	91	0	103	36	21	18	23	1.95
684096--684153	20	2.6	22	84	10	75	27	22	18	31	1.97
686615--686696	30	2.8	30	86	1	103	32	30	20	15	1.94
686672--686736	31	2.1	31	85	5	87	36	21	18	23	1.95
687627--687684	20	2.6	22	84	10	75	27	22	18	31	1.97
687672--687812	64	2.2	63	80	12	155	25	22	18	33	1.97
694918--694970	24	2.3	23	80	3	61	56	1	0	41	1.10
699263--699295	17	1.9	17	88	11	50	36	3	0	60	1.12
705230--705540	53	5.9	53	84	3	421	21	27	18	32	1.97
705230--705540	106	2.9	106	88	1	464	21	27	18	32	1.97
705244--705539	159	1.9	159	90	2	479	22	26	18	32	1.97
705212--705596	53	7.2	53	82	6	397	23	27	18	30	1.98
705212--705595	106	3.6	106	83	4	461	23	27	18	30	1.97
705212--705595	159	2.4	158	82	4	466	23	27	18	30	1.97
705469--705745	55	5.1	54	83	11	252	26	27	18	27	1.98
705533--705900	106	3.5	106	86	6	439	27	27	16	29	1.97
705533--705913	51	7.3	51	88	5	446	27	27	16	28	1.97
707264--707345	17	4.8	17	72	19	55	7	18	0	74	1.04
707264--707316	27	1.9	28	88	11	83	7	15	0	77	0.98
707271--707404	61	2.2	61	85	9	177	7	17	0	73	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
707351--707401	18	2.8	18	85	14	61	7	19	1	70	1.21
707264--707405	25	5.4	26	70	21	100	7	18	0	73	1.09
717039--717198	45	3.4	48	81	13	190	36	20	11	30	1.89
717048--717181	45	2.9	45	92	2	214	37	21	11	29	1.88
724595--724668	29	2.4	29	82	6	85	60	5	1	32	1.27
724619--724661	23	1.9	23	85	4	61	65	4	2	27	1.25
724619--724667	23	2.2	22	81	3	53	63	4	2	30	1.24
727415--727460	19	2.3	20	82	17	60	23	6	10	58	1.55
729212--729261	21	2.4	21	80	12	66	20	30	28	22	1.98
735882--735934	21	2.5	21	87	0	79	20	24	18	35	1.95
735924--735982	21	2.9	20	72	5	64	35	20	22	22	1.96
735982--736056	21	3.6	21	76	3	71	24	20	16	40	1.91
735971--736048	41	1.9	40	89	2	120	20	19	17	42	1.90
735965--736038	20	3.7	20	76	5	78	20	20	18	40	1.92
736046--736139	20	4.7	20	74	2	89	42	18	18	21	1.89
736046--736157	20	5.6	20	75	4	82	40	19	18	21	1.92
736368--736420	27	1.9	27	84	3	70	39	30	9	20	1.84
736745--736873	19	7.5	18	73	17	89	10	25	21	41	1.86
736767--736837	14	4.6	14	77	19	79	8	26	23	40	1.83
736750--736824	32	2.2	33	93	6	125	9	24	22	44	1.82
736764--736830	16	4.2	16	81	14	93	7	28	23	40	1.82
736764--736857	48	1.9	49	93	2	163	9	26	24	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
738567--739130	94	6.1	94	96	1	978	21	12	18	46	1.82
739229--739285	19	2.9	19	78	5	69	14	19	19	47	1.82
739738--739804	21	3.2	21	66	6	55	23	35	20	19	1.95
739686--739804	42	2.8	42	81	5	107	22	36	18	22	1.95
741157--741192	14	2.6	14	95	0	63	33	0	22	44	1.53
741294--741395	19	5.9	19	73	23	100	48	23	19	8	1.77
741294--741390	33	2.9	33	92	3	160	47	23	19	9	1.78
743647--743671	12	2.1	12	100	0	50	0	28	0	72	0.86
744660--744776	41	2.9	39	84	3	135	23	17	25	32	1.97
744633--744772	20	6.9	20	81	1	136	27	18	25	28	1.98
744699--744794	41	2.3	41	85	3	131	22	19	22	34	1.97
744762--744813	20	2.5	21	87	3	70	21	23	17	38	1.93
744803--744855	21	2.5	22	81	6	74	33	18	26	20	1.96
747147--747238	45	2.0	45	100	0	184	41	17	6	34	1.75
749954--750005	23	2.3	22	83	9	68	59	19	17	3	1.52
752158--752190	16	2.0	17	88	5	50	33	12	3	51	1.54
756524--756692	41	4.1	41	96	0	311	31	14	11	42	1.80
759131--759269	60	2.3	61	83	2	181	31	23	4	40	1.74
759402--759571	60	2.9	59	80	6	175	43	4	18	33	1.69
759442--759590	60	2.5	60	78	10	162	44	5	18	32	1.72
769019--769089	13	4.9	13	69	21	52	56	0	4	39	1.19
785066--785100	18	1.9	18	94	0	61	17	22	34	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
790277--790307	2	15.5	2	100	0	62	48	0	0	51	1.00
792748--792781	18	1.9	17	88	5	50	26	17	17	38	1.92
793597--793631	2	17.5	2	100	0	70	51	0	48	0	1.00
794686--794711	3	8.7	3	100	0	52	65	0	0	34	0.93
795181--795216	2	18.0	2	100	0	72	50	0	0	50	1.00
795372--795397	12	2.2	12	100	0	52	42	15	7	34	1.75
798824--799005	91	2.0	91	98	0	355	31	14	14	39	1.86
802661--802724	29	2.2	30	83	5	78	53	3	3	40	1.33
810395--810429	15	2.3	15	90	0	52	17	11	31	40	1.85
818240--818321	29	2.8	29	92	1	128	34	13	9	42	1.77
819610--819639	15	2.0	15	93	0	51	56	23	0	20	1.42
822959--823040	29	2.8	29	94	1	137	32	14	9	42	1.79
825113--825148	2	18.5	2	94	5	65	47	0	0	52	1.00
826146--826261	3	39.7	3	70	16	66	62	0	37	0	0.95
826133--826248	47	2.6	44	85	10	171	63	0	36	0	0.94
826298--826341	21	2.1	21	95	0	79	27	0	15	56	1.40
826319--826440	38	3.5	33	80	9	136	36	0	12	50	1.46
829901--830082	51	3.5	50	85	8	240	26	22	17	34	1.96
830077--830479	54	7.5	54	90	0	635	19	25	18	36	1.95
830481--830560	37	2.2	37	84	4	99	20	20	16	43	1.88
830858--830980	37	3.4	37	85	2	149	26	18	21	34	1.96
830842--830980	73	1.9	73	83	2	181	25	19	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
835730--835867	72	1.9	72	93	0	240	24	26	13	35	1.93
836412--836524	55	2.1	55	89	0	172	21	23	13	42	1.87
837828--837870	23	2.0	22	83	16	56	58	4	0	37	1.19

Tables:   1   2   3   4

The End!