genome.fa.s9621.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009621.1 Hibiscus syriacus cultivar Beakdansim tig00117010_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  839111

Tables:   1   2   3   4   

This is table  3  of  4  ( 451 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
462990--463047	28	2.2	26	81	12	64	32	5	3	58	1.37
465290--465335	13	3.3	13	82	14	56	21	13	6	58	1.57
471884--471962	22	3.6	22	89	0	131	32	12	12	41	1.81
472637--473261	74	8.4	74	94	1	1015	24	21	21	32	1.98
473392--473444	3	17.7	3	88	0	79	37	0	0	62	0.96
476260--476325	30	2.2	30	94	2	116	39	15	30	15	1.88
484731--484799	36	1.9	36	84	0	93	33	5	26	34	1.80
490298--490818	93	5.5	93	76	11	452	32	17	23	25	1.97
490495--490524	7	4.3	7	100	0	60	26	26	13	33	1.93
490402--490617	107	2.0	107	88	1	317	33	17	21	27	1.96
490509--490788	94	3.1	94	80	8	253	33	16	23	26	1.96
490625--490788	84	1.9	85	83	3	215	33	16	25	25	1.96
490774--490901	66	1.9	66	82	3	159	34	19	25	21	1.96
490840--491021	93	2.0	93	87	4	269	32	18	25	23	1.97
494632--494663	16	2.0	16	93	0	55	28	18	28	25	1.98
494649--494748	11	8.8	11	74	18	89	23	23	23	31	1.99
494660--494758	23	4.3	23	94	0	171	22	24	23	30	1.99
496654--496734	7	11.6	7	75	0	63	18	1	32	48	1.56
496661--496714	21	2.6	21	84	0	72	20	1	27	50	1.59
496823--496885	11	5.9	11	69	14	51	39	0	3	57	1.15
497611--497672	31	2.0	31	100	0	124	48	0	12	38	1.42
499852--499886	2	17.5	2	100	0	70	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500047--500103	24	2.4	24	90	0	87	26	10	12	50	1.72
506414--506494	39	2.1	39	100	0	162	56	14	2	25	1.51
509767--509832	31	2.3	28	74	18	73	21	21	28	28	1.98
510245--510284	21	1.9	21	89	0	62	42	0	0	57	0.98
513867--513899	2	16.5	2	100	0	66	51	0	0	48	1.00
514152--514222	18	3.8	18	78	7	88	26	30	22	19	1.98
514816--514919	45	2.3	46	83	3	122	29	15	19	35	1.92
515884--515908	13	1.9	13	100	0	50	72	0	0	28	0.86
522348--522671	81	4.0	81	90	2	479	27	21	12	38	1.89
522622--522945	68	4.8	68	87	0	470	31	22	14	31	1.94
523161--523376	59	3.8	58	88	7	293	36	18	11	33	1.87
523859--523928	32	2.2	32	87	5	97	18	21	15	44	1.87
528783--528824	21	2.0	22	85	4	59	50	0	7	42	1.30
530069--530119	24	2.2	24	86	10	70	49	1	5	43	1.38
532598--532627	13	2.3	13	94	0	51	53	3	3	40	1.34
538029--538402	170	2.2	168	82	3	444	36	16	15	31	1.91
545970--546009	21	1.9	21	89	0	62	25	40	25	10	1.86
549562--549611	24	2.2	22	79	10	57	40	28	0	32	1.57
549571--549660	30	3.4	25	76	18	94	43	32	2	22	1.65
551571--551611	17	2.4	17	100	0	82	19	24	21	34	1.97
555187--555220	2	17.0	2	100	0	68	50	0	0	50	1.00
559167--559226	24	2.5	24	97	0	111	46	15	21	16	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
559368--559393	6	4.3	6	100	0	52	65	19	15	0	1.27
566520--566559	17	2.3	19	79	16	50	67	22	5	5	1.30
583669--583720	14	3.7	14	78	12	54	32	1	0	65	1.04
583827--583935	41	2.6	41	77	9	107	42	0	1	55	1.17
587978--588006	2	14.5	2	100	0	58	51	0	0	48	1.00
588252--588278	9	3.0	9	100	0	54	77	0	0	22	0.76
592496--592625	66	2.0	63	95	4	233	26	9	33	31	1.88
592723--592747	13	1.9	13	100	0	50	52	0	0	48	1.00
592983--593021	20	1.9	21	89	5	62	51	0	10	38	1.36
596773--596800	14	2.0	14	100	0	56	7	42	0	50	1.30
600525--600561	16	2.3	17	81	13	51	64	8	0	27	1.21
609155--609255	36	2.8	36	96	0	184	41	14	16	26	1.88
617713--617805	36	2.6	36	89	0	132	44	12	15	27	1.83
622048--622186	36	3.9	36	94	0	233	43	15	16	24	1.87
625562--625598	19	1.9	19	94	0	65	32	29	16	21	1.95
626034--626058	11	2.3	11	100	0	50	16	0	0	84	0.63
626330--626466	20	7.2	20	73	12	83	17	18	21	42	1.89
626433--626476	20	2.2	20	87	0	61	9	15	20	54	1.68
628374--628442	20	3.5	20	84	7	95	34	24	20	20	1.96
628519--628549	14	2.2	14	94	0	53	6	19	22	51	1.69
628514--628579	33	2.0	34	87	3	98	12	19	21	46	1.82
628571--628630	20	3.0	20	87	0	84	20	21	23	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
628626--628668	19	2.2	20	91	4	70	16	11	20	51	1.75
629207--629276	21	3.3	21	72	5	70	22	37	20	20	1.95
629165--629276	42	2.7	42	79	8	120	24	36	17	21	1.95
630652--630763	27	3.8	27	71	19	98	28	2	16	52	1.57
630657--630799	63	2.3	63	92	2	245	29	3	15	51	1.60
630684--630791	36	3.3	34	70	22	104	29	4	13	51	1.61
630866--630938	20	3.7	20	83	3	85	43	24	17	13	1.86
630922--630952	14	2.2	14	100	0	62	48	25	19	6	1.72
630947--631192	20	12.6	20	82	5	272	26	19	21	32	1.97
631163--631445	140	2.0	140	97	0	530	43	15	13	27	1.84
634687--634742	21	2.7	21	100	0	112	17	16	25	41	1.89
634757--634803	21	2.2	21	80	0	58	34	19	21	25	1.96
634848--634884	19	1.9	19	88	0	56	24	16	27	32	1.96
637928--638282	36	10.0	36	73	19	200	47	3	4	44	1.41
637991--638111	64	1.9	64	88	5	183	44	1	4	48	1.34
638168--638236	29	2.3	30	82	2	86	52	4	2	40	1.36
638072--638228	79	2.0	81	81	7	187	51	3	3	41	1.36
638003--638282	144	2.0	140	82	11	345	49	2	3	44	1.33
639599--639713	4	27.5	4	73	11	63	24	3	0	71	1.07
639653--639707	21	2.6	21	81	16	60	16	5	1	76	1.06
639675--639724	17	2.8	18	85	11	59	22	2	0	76	0.89
639654--639727	13	5.5	13	75	20	55	17	4	1	77	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
639675--639717	17	2.6	18	89	10	65	20	2	0	76	0.89
643394--643720	110	3.0	109	86	2	444	34	23	18	23	1.96
643818--644202	84	4.6	83	85	4	524	30	25	18	24	1.98
643846--644201	165	2.1	164	85	4	480	31	25	18	24	1.98
644665--644702	20	1.9	20	89	10	60	13	31	34	21	1.91
646854--647670	84	9.9	82	79	8	761	30	24	19	25	1.98
646895--647669	165	4.7	165	85	5	908	30	24	19	24	1.98
648316--648582	38	7.2	35	80	12	270	44	5	6	44	1.52
648304--648582	74	3.7	74	80	11	302	44	5	6	44	1.52
648544--648612	29	2.3	30	85	2	95	50	4	2	42	1.37
648518--648644	66	2.0	63	83	6	157	50	4	2	42	1.36
648575--648651	36	2.1	37	92	2	129	53	1	1	44	1.17
648575--648668	36	2.5	37	87	5	127	50	1	4	44	1.28
649955--650036	13	6.6	11	80	14	65	17	3	0	79	0.88
649960--650056	4	23.5	4	77	15	58	17	5	1	76	1.03
649953--650069	16	7.1	16	71	19	71	17	5	0	76	1.02
649953--650069	52	2.3	50	81	8	123	17	5	0	76	1.02
649960--650053	17	5.7	15	77	17	71	17	5	1	76	1.02
649953--650070	50	2.4	50	78	16	122	17	5	0	76	1.02
650761--650937	51	3.5	51	84	2	225	26	14	15	43	1.85
654728--654777	12	4.1	12	76	21	50	14	8	10	68	1.40
660260--660299	22	1.9	22	90	10	66	27	30	5	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
661264--661288	12	2.1	12	100	0	50	32	16	20	32	1.94
663740--664291	281	2.0	279	95	1	989	44	9	7	39	1.64
667368--667425	20	2.6	22	86	10	75	25	22	22	29	1.99
667413--667553	64	2.2	63	79	7	151	26	23	17	32	1.97
668553--668672	64	1.9	64	87	0	177	35	20	19	25	1.96
669367--669423	23	2.5	23	85	0	78	22	19	22	35	1.96
674724--674783	23	2.6	23	91	0	102	16	26	28	28	1.97
679389--679432	23	1.9	23	95	0	79	20	25	22	31	1.98
679385--679435	23	2.2	23	82	0	75	19	25	25	29	1.99
681615--681652	18	2.1	18	95	0	67	31	13	10	44	1.77

Tables:   1   2   3   4