genome.fa.s9628.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009628.1 Hibiscus syriacus cultivar Beakdansim tig00117021_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2284295

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  3  of  10  ( 1154 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507652--507706	27	2.0	27	96	0	101	27	27	16	29	1.97
512931--512962	11	3.1	11	91	8	50	59	0	0	40	0.97
513136--513342	53	3.9	53	87	2	317	21	27	20	31	1.98
513718--513836	41	2.9	42	85	5	145	34	22	17	25	1.96
513765--513839	22	3.6	20	70	13	62	34	22	17	25	1.96
513717--513976	42	6.3	42	71	10	189	31	21	19	27	1.97
513884--514325	214	2.1	214	90	0	695	30	18	16	33	1.94
522034--522115	30	2.8	30	83	1	94	32	31	19	15	1.93
522091--522185	31	3.1	31	80	3	93	34	21	17	26	1.95
522845--523005	64	2.5	64	84	4	200	26	19	19	34	1.96
528359--528425	22	3.0	22	100	0	134	26	26	26	19	1.99
528719--528790	29	2.5	29	93	0	117	38	12	9	38	1.76
529093--529246	68	2.2	69	86	5	206	18	27	26	27	1.98
529093--529268	67	2.6	67	83	8	187	18	27	26	27	1.98
535307--535395	22	4.0	22	100	0	178	26	26	26	19	1.99
535615--535674	30	2.0	31	90	3	95	33	23	6	36	1.81
535689--535760	29	2.5	29	93	0	117	38	12	9	38	1.76
536063--536216	68	2.2	69	85	5	197	18	27	26	27	1.98
536063--536238	67	2.6	67	82	8	178	18	27	26	28	1.98
542278--542344	22	3.0	22	97	0	125	26	26	25	20	1.99
542564--542623	30	2.0	31	90	3	95	33	23	6	36	1.81
542638--542709	29	2.5	29	93	0	117	38	12	9	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
543012--543163	66	2.2	68	84	9	195	18	28	25	27	1.98
545025--545127	45	2.2	47	86	6	147	39	20	13	26	1.89
547511--547576	19	3.6	19	79	8	91	22	22	22	31	1.98
547528--547591	17	3.6	17	77	10	74	26	21	21	29	1.99
547511--547591	36	2.2	36	97	2	153	24	22	22	30	1.99
547606--547656	19	2.7	19	85	8	70	25	15	35	23	1.94
547462--547656	100	1.9	101	83	4	250	27	17	24	30	1.97
547544--547707	65	2.5	65	78	15	180	26	17	25	31	1.97
556030--556208	64	2.8	64	82	6	179	27	17	25	29	1.97
571876--571971	41	2.3	40	77	5	102	37	9	10	42	1.71
575657--575820	84	2.0	84	98	0	319	27	18	14	40	1.89
576632--576735	50	2.1	50	94	0	181	38	17	8	35	1.80
581213--581269	6	9.7	6	92	3	80	29	49	15	5	1.67
581217--581261	23	2.0	23	90	0	72	26	48	17	6	1.72
587147--587207	6	10.2	6	96	0	104	31	49	16	3	1.62
597351--597415	30	2.2	30	94	0	112	33	23	16	26	1.96
598438--598481	19	2.3	19	96	0	79	29	20	27	22	1.99
598454--598612	63	2.5	64	76	6	169	34	20	18	25	1.96
599398--599615	103	2.1	103	95	0	391	26	13	23	36	1.92
599645--599697	23	2.3	23	83	0	61	26	18	20	33	1.96
601008--601061	20	2.7	20	97	0	99	29	29	16	24	1.97
602977--603016	12	3.3	12	83	10	55	35	2	0	62	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
603508--603532	10	2.5	10	100	0	50	76	0	0	24	0.80
603937--603966	2	15.0	2	100	0	60	50	0	0	50	1.00
604189--604225	18	2.1	18	89	0	56	48	16	10	24	1.77
611505--611573	30	2.3	30	87	5	104	11	10	21	56	1.64
612734--612808	2	37.5	2	100	0	150	50	0	0	49	1.00
613405--613481	40	1.9	40	94	0	136	33	14	31	20	1.93
618655--618695	18	2.2	19	91	4	66	68	4	0	26	1.10
620807--620896	42	2.2	41	91	2	144	22	40	7	30	1.82
622841--622886	20	2.3	20	92	0	74	52	6	4	36	1.47
627187--627289	45	2.3	45	83	8	122	33	17	20	28	1.95
627316--627353	20	1.9	20	100	0	76	31	21	18	28	1.97
628032--628080	21	2.6	18	83	9	62	18	22	30	28	1.97
633363--633431	23	3.0	23	83	8	95	27	27	26	18	1.98
634403--634564	64	2.5	65	76	8	161	32	20	20	26	1.97
635364--635581	103	2.1	103	95	0	391	25	13	23	37	1.91
635588--635665	23	3.3	23	81	1	93	25	19	21	33	1.97
637178--637215	16	2.4	17	86	8	53	44	5	0	50	1.24
640722--640766	21	2.1	21	87	0	63	31	28	24	15	1.96
641684--641713	2	15.0	2	92	0	51	50	0	3	46	1.18
642463--642529	22	3.0	22	95	2	116	19	26	28	25	1.99
645027--645103	2	39.0	2	89	7	113	48	0	1	50	1.09
645027--645126	30	3.3	32	86	9	122	46	1	3	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
645678--645720	21	2.0	21	86	0	59	51	20	2	25	1.60
646048--646119	31	2.3	31	83	4	83	56	11	1	30	1.42
646718--646777	31	2.0	31	90	3	95	26	13	13	46	1.80
678811--678848	18	2.1	18	95	0	67	21	21	10	47	1.80
680899--680957	31	1.9	31	85	0	82	38	20	13	27	1.90
680983--681028	24	2.0	23	91	4	74	26	28	23	21	1.99
681003--681079	17	4.5	17	88	0	109	25	29	16	27	1.97
684397--684537	64	2.2	63	81	9	162	32	18	23	25	1.97
685453--685517	31	2.1	31	85	5	87	23	18	21	36	1.95
686818--686912	14	6.3	14	71	20	66	43	24	2	30	1.66
692654--692980	51	6.4	51	81	8	335	50	11	8	29	1.68
693181--693208	12	2.3	12	100	0	56	50	0	0	50	1.00
694746--694790	17	2.6	18	78	3	56	40	11	6	42	1.67
695212--695358	76	1.9	76	94	0	258	30	21	17	30	1.96
697282--697334	18	2.9	18	72	10	54	67	0	0	32	0.91
703398--703428	15	2.1	14	94	5	53	58	16	12	12	1.64
709550--709636	41	2.1	41	93	0	147	32	11	9	47	1.71
713237--713286	23	2.3	22	83	16	61	40	16	10	34	1.81
715914--715958	23	2.0	23	86	0	63	26	26	26	20	1.99
715934--716242	150	2.1	150	95	0	555	34	21	17	27	1.95
722851--722895	23	2.0	23	86	0	63	26	26	26	20	1.99
722863--723179	150	2.1	150	95	1	573	34	21	17	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
725761--725820	20	2.9	21	90	7	95	30	25	26	18	1.98
727176--727376	103	2.1	94	86	10	273	26	14	22	36	1.93
727393--727460	23	3.0	23	93	0	109	20	29	26	23	1.99
728853--728934	30	2.8	29	83	9	103	46	4	14	34	1.66
734640--734714	24	3.1	24	82	0	87	32	17	22	28	1.96
736326--736397	30	2.4	30	85	0	90	30	26	22	20	1.98
736384--736634	31	8.0	31	77	13	255	31	19	19	30	1.96
736409--736637	63	3.7	63	97	0	424	31	18	18	31	1.95
741438--741509	30	2.4	30	85	0	90	30	26	22	20	1.98
741496--741683	31	6.0	31	78	11	204	30	19	19	30	1.96
741521--741686	63	2.7	63	97	0	307	30	18	18	31	1.95
745864--745919	14	3.8	14	75	15	51	60	1	1	35	1.17
746504--746548	19	2.3	20	77	11	58	66	4	0	28	1.11
751796--751842	21	2.2	21	88	0	67	25	21	48	4	1.68
752101--752125	2	12.5	2	100	0	50	0	0	48	52	1.00
768934--768959	7	3.7	7	100	0	52	46	0	15	38	1.46
773091--773159	23	3.0	23	91	0	111	24	26	28	20	1.99
773597--773650	21	2.6	21	96	0	99	25	16	27	29	1.97
773643--773710	20	3.4	20	85	4	93	11	20	23	44	1.84
774452--774521	19	3.5	19	74	11	77	40	21	20	18	1.92
774445--774562	21	5.8	20	72	14	84	35	22	17	23	1.95
774449--774541	41	2.3	41	96	1	170	37	22	19	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
774530--774589	24	2.7	21	80	14	75	31	26	15	26	1.95
774582--774618	12	2.7	14	84	16	51	40	27	21	10	1.86
780652--780810	78	2.0	78	95	0	282	21	17	8	52	1.72
785305--785344	19	2.1	19	90	9	64	25	17	17	40	1.91
785844--785980	67	2.0	69	92	4	233	29	16	18	35	1.93
786787--786869	42	2.0	42	92	0	139	28	24	21	25	1.99
786998--787022	6	4.2	6	100	0	50	32	36	0	32	1.58
788552--788736	29	6.4	30	85	7	242	32	23	18	24	1.97
788552--788736	57	3.2	60	84	7	242	32	23	18	24	1.97
788581--788761	87	2.1	89	83	6	226	32	23	19	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10