genome.fa.s14898.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014898.1 Kokia drynarioides strain JFW-HI SEQ_129941, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1273188

Tables:   1   2   3   4   

This is table  1  of  4  ( 382 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2420--2469	20	2.5	20	81	15	59	42	0	0	58	0.98
4250--4291	2	21.0	2	100	0	84	50	0	0	50	1.00
4669--4698	3	10.0	3	92	0	51	0	30	0	70	0.88
10054--10147	45	2.1	45	88	6	136	57	7	2	32	1.38
10289--10318	15	2.0	15	100	0	60	53	26	6	13	1.64
11592--11701	53	2.1	53	98	0	211	38	26	11	23	1.89
15963--16010	19	2.4	20	82	6	62	35	2	4	58	1.29
17705--17759	24	2.3	24	84	3	67	20	23	16	40	1.91
26159--26189	10	2.9	11	90	9	55	25	9	0	64	1.24
29119--29145	12	2.2	12	100	0	54	59	7	7	25	1.51
33338--33603	135	2.0	135	85	0	361	34	13	27	24	1.93
33623--33733	3	37.0	3	88	0	168	62	0	33	4	1.16
35050--35084	18	1.9	18	94	0	61	8	20	25	45	1.79
37231--37297	30	2.2	30	89	5	100	28	0	10	61	1.29
39231--39269	6	6.5	6	87	0	51	23	30	0	46	1.53
39291--39344	22	2.5	22	82	11	58	44	12	0	42	1.43
50318--50342	12	2.1	12	100	0	50	36	8	0	56	1.29
59076--59110	18	1.9	18	100	0	70	57	8	22	11	1.61
61706--61767	18	3.4	18	80	6	63	64	4	1	29	1.23
63433--63466	16	2.1	17	88	5	52	50	0	0	50	1.00
64184--64244	12	5.2	12	80	5	63	29	16	11	42	1.83
64184--64245	24	2.6	24	87	7	83	29	16	11	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64336--64404	23	3.0	23	91	0	111	24	10	20	44	1.82
64347--64385	11	3.5	11	79	6	51	20	10	20	48	1.78
64331--64399	12	5.8	12	69	8	52	24	11	20	43	1.85
64342--64420	23	3.4	23	89	3	106	29	10	18	41	1.83
65575--65630	24	2.3	23	80	14	60	66	0	3	30	1.09
66495--66545	16	3.2	16	78	13	61	58	0	13	27	1.36
70795--70857	3	22.0	3	80	9	69	68	0	30	1	0.99
70809--70870	23	2.7	23	85	5	72	61	0	37	1	1.06
73942--74004	22	2.9	22	95	0	108	11	19	28	41	1.85
75915--75957	13	3.2	13	80	9	50	11	20	25	41	1.86
82322--82442	60	2.0	60	100	0	242	23	14	18	43	1.87
83765--83858	18	5.4	17	80	5	89	45	2	2	50	1.25
83779--83839	6	10.5	6	72	13	56	44	3	1	50	1.28
83782--83837	11	4.9	11	75	14	51	39	3	1	55	1.28
83747--83856	17	6.4	17	77	7	96	42	1	4	50	1.33
83747--83858	35	3.2	35	79	6	102	42	1	4	50	1.32
84597--84643	15	3.0	15	84	6	58	57	0	4	38	1.18
84771--84820	17	2.8	18	74	11	50	70	4	8	18	1.28
90369--91050	42	16.3	42	85	1	825	21	18	23	36	1.95
92089--92126	19	2.0	19	89	0	58	36	5	7	50	1.54
91970--92623	151	4.4	150	82	8	794	43	3	9	43	1.52
93672--94142	238	2.0	237	91	2	775	36	5	15	41	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101598--101653	21	2.7	21	85	0	76	33	25	16	25	1.95
103931--104118	93	2.0	94	95	1	342	39	17	18	24	1.92
105874--105899	12	2.2	12	100	0	52	11	15	26	46	1.80
112772--112833	30	2.1	30	100	0	124	40	9	12	37	1.77
117346--117393	13	3.7	13	77	0	60	18	6	31	43	1.75
117347--117399	26	2.0	26	100	0	106	15	7	30	47	1.73
121083--121128	24	1.9	24	86	0	65	47	8	2	41	1.46
123370--123429	21	2.9	21	80	9	61	36	25	11	26	1.90
123487--123583	42	2.2	42	81	5	104	34	23	13	28	1.93
123506--123583	24	3.5	24	66	20	69	34	20	14	30	1.92
123513--123596	42	2.0	42	97	0	159	30	20	14	34	1.92
126617--126666	20	2.5	20	81	15	50	42	14	0	44	1.44
127072--127155	20	4.2	20	78	4	98	33	22	30	13	1.92
131961--132245	79	3.6	78	84	2	347	34	27	17	20	1.95
131961--132251	159	1.8	158	85	2	406	34	26	17	20	1.95
137993--138068	20	3.8	20	87	3	109	27	21	34	17	1.95
137950--138068	60	2.0	60	84	0	157	30	21	31	17	1.96
137951--138069	20	5.9	20	80	3	107	31	20	31	17	1.96
139393--139524	66	2.0	66	98	0	255	35	21	18	24	1.96
140614--140668	28	2.0	28	88	0	83	30	10	20	38	1.87
140619--140676	28	2.1	28	86	0	80	32	12	18	36	1.88
156586--156611	10	2.6	10	100	0	52	0	26	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159194--159232	20	2.0	20	85	10	53	61	7	15	15	1.55
169104--169152	11	4.6	11	78	19	50	81	4	14	0	0.83
169102--169155	12	4.5	11	82	13	63	83	3	12	0	0.78
170024--170306	49	5.8	49	80	3	266	35	16	26	20	1.94
170024--170306	97	2.9	98	80	3	327	35	16	26	20	1.94
170431--171123	42	17.1	42	75	9	539	32	24	15	26	1.96
170603--171064	38	11.7	38	73	11	214	32	24	15	27	1.95
170431--171056	120	5.2	121	75	10	475	32	25	15	26	1.95
170431--171124	158	4.3	158	79	7	641	32	24	15	26	1.96
173076--173119	18	2.5	18	77	3	54	25	0	4	70	1.06
176184--176330	57	2.6	57	74	13	149	25	7	8	57	1.55
176519--176629	30	3.8	29	83	6	138	61	6	1	30	1.31
176572--176623	13	3.9	13	73	14	52	59	5	0	34	1.21
176585--176635	21	2.4	23	81	15	65	64	3	0	31	1.11
181023--181115	25	3.7	25	86	0	123	32	25	19	22	1.97
186544--186589	21	2.1	21	88	4	65	26	19	15	39	1.91
190294--190381	25	3.5	25	90	0	131	29	28	20	21	1.98
192969--193383	209	2.0	209	95	0	740	28	22	15	33	1.94
198146--198209	22	3.0	21	79	4	65	37	21	7	32	1.83
234799--234932	68	2.0	69	92	1	225	42	5	3	48	1.43
239696--239869	91	1.9	91	90	0	276	22	14	27	35	1.93
250213--250248	11	3.2	11	92	4	54	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
253966--254033	30	2.2	31	82	10	77	26	14	20	38	1.91
254188--254288	30	3.4	30	79	5	96	21	19	19	38	1.93
256334--256466	66	2.0	66	100	0	266	27	12	27	33	1.92
256934--256967	6	5.8	6	86	6	52	35	0	0	64	0.94
264600--264690	44	2.1	44	100	0	182	32	8	29	28	1.87
271139--271237	23	4.2	23	73	10	83	39	19	29	12	1.87
274249--274308	31	2.0	30	86	3	84	40	18	23	18	1.92
278227--278266	19	2.1	19	100	0	80	22	20	20	37	1.94
279950--280021	21	3.4	21	79	7	74	31	27	12	27	1.93
280082--280133	21	2.5	21	100	0	104	28	21	5	44	1.75
283683--283727	20	2.2	20	84	7	56	31	15	2	51	1.56
290090--290207	61	1.9	61	86	6	166	40	11	13	33	1.81
298439--298501	23	2.8	23	78	2	74	53	0	1	44	1.10
305169--305245	21	3.7	21	82	0	100	29	27	11	31	1.92
306180--306237	19	3.1	19	87	0	80	22	22	18	36	1.95
314469--314543	21	3.7	21	73	7	64	29	24	13	33	1.93
318974--319036	24	2.6	24	84	0	81	26	14	9	49	1.74
320953--321033	24	3.4	24	92	0	126	27	12	8	51	1.68
322840--322903	30	2.1	30	94	0	110	29	0	21	48	1.51
325418--325448	6	5.2	6	100	0	62	32	0	67	0	0.91
325622--325648	14	1.9	14	100	0	54	37	14	18	29	1.91
325847--325910	21	3.3	21	68	20	66	48	18	3	29	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327083--327139	30	1.9	30	92	0	96	33	12	21	33	1.90
327124--327248	30	4.2	29	85	3	160	43	5	15	36	1.70
327094--327268	60	3.0	60	84	5	187	41	7	17	33	1.78
327124--327279	30	5.3	30	81	7	149	42	8	14	33	1.76
334463--334512	26	1.9	26	83	0	64	32	28	12	28	1.92
336293--336476	91	2.0	91	98	0	359	32	9	26	32	1.88
336557--336624	33	2.1	33	94	0	118	23	17	25	33	1.96
336887--336930	22	2.0	22	86	0	61	15	9	13	61	1.56
345455--345500	24	1.9	23	86	8	65	56	6	4	32	1.45
346106--346203	22	4.1	22	77	16	97	36	2	12	48	1.52

Tables:   1   2   3   4