genome.fa.s14898.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014898.1 Kokia drynarioides strain JFW-HI SEQ_129941, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1273188

Tables:   1   2   3   4   

This is table  3  of  4  ( 382 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
734339--734377	10	3.5	11	89	10	53	0	17	0	82	0.68
739400--739558	79	2.0	79	97	0	300	47	1	16	34	1.55
743070--743099	14	2.2	14	94	5	53	36	10	23	30	1.87
744277--744324	16	2.8	17	90	6	71	2	18	2	77	0.97
757859--757959	27	3.8	27	80	1	105	32	11	23	31	1.91
762386--762423	19	2.0	20	94	5	69	55	0	0	44	0.99
762386--762430	17	2.5	18	89	7	65	51	2	0	46	1.13
770559--770604	23	2.0	23	100	0	92	17	8	17	56	1.65
771033--771096	20	3.2	20	72	0	74	26	17	15	40	1.89
771018--771115	40	2.5	40	91	0	169	23	19	16	40	1.90
778819--778863	22	2.0	22	95	0	81	15	8	20	55	1.66
780803--780839	18	2.1	18	89	0	56	18	56	2	21	1.54
780730--780876	54	2.7	54	80	6	156	25	47	4	23	1.69
781600--781625	5	5.2	5	100	0	52	80	0	0	19	0.71
782629--782715	45	2.0	45	90	2	140	44	31	0	24	1.54
784159--784248	20	4.5	20	73	9	58	28	10	13	47	1.75
790961--790993	11	3.1	11	91	4	50	48	0	0	51	1.00
791359--791397	11	3.5	11	89	6	60	61	0	0	38	0.96
796386--796592	109	1.9	110	84	3	283	40	18	11	29	1.86
796759--796815	18	3.3	17	76	11	53	68	1	7	22	1.23
797345--797379	17	2.1	17	100	0	70	11	45	31	11	1.76
798284--798452	84	2.0	84	100	0	338	27	23	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
809276--809307	16	2.0	16	93	0	55	25	18	3	53	1.59
811929--812011	27	3.3	27	65	22	81	54	15	26	3	1.58
811926--812019	47	2.0	47	100	0	188	55	14	25	4	1.58
814636--815050	45	9.2	46	80	6	418	24	13	26	35	1.92
814636--815050	91	4.6	91	81	6	434	24	13	26	35	1.92
818661--818862	108	1.9	108	82	2	253	25	19	18	36	1.94
831870--832199	26	12.7	27	77	4	290	31	16	26	24	1.96
831870--832195	78	4.2	77	85	3	420	32	16	26	24	1.96
843322--843365	21	2.1	21	86	0	61	65	0	29	4	1.12
843825--843860	17	2.2	16	90	5	54	25	13	8	52	1.68
844403--844439	15	2.4	15	86	4	56	78	2	13	5	1.03
850314--850347	12	2.8	12	87	12	52	2	17	0	79	0.86
851380--851422	23	2.0	21	86	9	59	2	25	0	72	0.97
866278--866312	5	6.8	5	90	6	52	0	22	0	77	0.78
866283--866312	11	2.8	11	95	5	53	0	20	0	80	0.72
866279--866312	16	2.1	16	94	0	59	0	20	0	79	0.73
867006--867034	14	2.0	15	93	6	51	0	41	0	58	0.98
873249--873376	26	4.9	26	82	0	166	29	24	15	30	1.96
888842--889272	195	2.2	191	80	5	456	26	25	19	28	1.98
893382--893418	17	2.2	17	90	0	56	13	21	10	54	1.69
894991--895079	44	2.0	44	95	0	160	25	16	10	47	1.78
900761--900890	26	5.0	26	86	0	143	26	21	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
900771--900890	52	2.3	52	86	0	168	26	21	19	32	1.97
908617--908655	18	2.2	18	85	0	51	56	2	5	35	1.35
909893--909930	10	3.7	10	89	6	58	68	2	0	28	1.03
909988--910027	21	1.9	21	84	0	53	52	2	2	42	1.28
912106--912148	19	2.4	18	85	11	61	37	0	4	58	1.19
914932--914974	21	2.0	22	81	4	52	20	32	16	30	1.95
914939--914979	21	1.9	21	85	5	55	21	31	19	26	1.97
920226--920265	8	4.9	8	87	6	53	42	2	22	32	1.67
920675--920721	17	2.7	19	75	18	57	27	6	23	42	1.78
926302--926358	17	3.4	17	78	7	62	21	15	14	49	1.80
933399--934068	8	83.9	8	83	6	471	24	0	35	39	1.61
933403--934028	12	52.6	12	82	3	449	24	0	36	38	1.61
933511--934070	4	140.2	4	88	0	582	23	0	32	42	1.61
934347--934418	28	2.5	28	80	11	74	27	6	11	54	1.61
935930--935965	11	3.2	11	88	7	54	41	0	2	55	1.14
939186--939219	18	1.9	18	88	5	52	23	0	8	67	1.18
939306--939554	45	5.7	43	76	7	205	42	15	18	24	1.88
939485--939592	45	2.4	45	82	3	128	38	15	20	25	1.92
947684--947716	17	2.0	17	88	5	50	78	0	6	15	0.93
948604--948659	20	2.8	20	83	0	58	32	10	25	32	1.90
950224--950257	17	1.9	18	88	5	52	14	38	5	41	1.70
955001--955083	41	2.0	41	100	0	166	34	14	24	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
967485--967539	23	2.3	25	78	12	71	69	5	7	18	1.32
967485--967541	24	2.5	22	82	8	69	68	5	7	19	1.33
976042--976084	21	2.0	21	82	8	52	25	11	4	58	1.52
984360--984408	18	2.8	18	87	3	64	0	18	2	79	0.83
996108--996152	17	2.5	19	92	7	76	62	13	11	13	1.55
996596--996660	3	21.3	3	96	3	121	0	33	0	66	0.92
998091--998119	12	2.4	12	100	0	58	34	0	24	41	1.55
1003341--1003465	43	2.9	42	83	4	160	34	9	18	37	1.83
1012237--1012262	3	8.7	3	100	0	52	34	0	30	34	1.58
1012574--1012648	39	2.0	37	84	10	98	38	14	17	29	1.89
1017232--1017281	24	2.1	24	96	0	91	48	4	4	44	1.40
1021349--1021428	31	2.6	30	83	11	92	33	2	12	51	1.53
1022152--1022219	34	2.0	34	100	0	136	26	44	0	29	1.55
1026594--1026671	42	1.9	40	92	5	129	51	3	28	16	1.62
1032750--1032797	5	9.2	5	86	4	60	79	0	4	16	0.89
1032753--1032797	22	2.1	21	87	4	63	80	0	4	15	0.87
1033829--1033883	14	4.1	15	76	21	50	38	25	20	16	1.92
1038880--1039019	35	4.1	35	82	12	132	26	3	8	61	1.41
1038881--1039022	65	2.2	66	84	5	189	26	3	9	61	1.42
1038911--1039022	31	3.5	31	81	11	136	25	2	8	63	1.37
1047489--1047595	52	2.1	52	96	0	196	33	13	30	22	1.92
1050555--1050592	5	7.6	5	91	8	60	18	0	0	81	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1050544--1050587	15	2.9	15	83	9	54	25	0	2	72	0.96
1050813--1050861	17	2.9	17	78	0	62	20	16	12	51	1.76
1053050--1053368	49	6.5	50	73	8	228	21	20	16	41	1.90
1053035--1053401	98	3.8	96	81	3	387	20	21	17	40	1.91
1055175--1055253	39	2.0	39	100	0	158	27	22	12	36	1.91
1064303--1064482	42	4.3	42	86	2	218	39	9	24	26	1.86
1066783--1066830	17	2.8	17	84	6	62	20	14	12	52	1.74
1081186--1081684	98	5.1	98	79	3	477	41	17	21	19	1.90
1081186--1081723	49	11.0	49	75	3	343	41	17	21	20	1.91
1083239--1083305	35	1.9	35	87	6	100	26	4	7	61	1.42
1083274--1083336	27	2.3	26	91	5	99	26	3	7	61	1.39
1083295--1083373	35	2.3	35	84	8	108	25	2	6	65	1.29
1083259--1083394	61	2.2	62	83	7	170	25	5	5	63	1.40
1097228--1097277	3	16.7	3	91	8	84	66	0	32	2	1.03
1098342--1098385	15	2.8	16	87	12	65	72	0	22	4	1.02
1112614--1112653	19	2.0	20	85	4	55	20	5	12	62	1.48
1115975--1116019	14	3.1	15	81	12	58	48	0	2	48	1.13
1116835--1116859	13	1.9	13	100	0	50	40	0	0	60	0.97
1116838--1116884	22	2.2	21	88	3	67	48	0	2	48	1.13
1118052--1118125	30	2.4	30	95	2	130	47	1	0	51	1.09
1118086--1118128	21	2.0	23	90	9	72	53	0	0	46	1.00
1118948--1119024	24	3.2	24	64	10	66	27	23	0	49	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1118961--1119039	25	3.2	25	67	3	79	27	26	0	45	1.54
1119274--1119366	14	6.4	14	65	24	50	20	2	11	65	1.35
1121418--1121463	22	2.2	20	84	7	56	76	8	0	15	1.02
1121611--1121700	13	7.0	12	69	17	56	70	3	3	23	1.18
1121612--1121700	26	3.4	26	74	10	67	70	3	3	22	1.17
1121641--1121706	20	3.5	19	74	13	57	72	3	1	22	1.06
1123657--1124167	51	10.1	51	70	9	244	28	20	17	33	1.95
1123643--1124120	101	4.8	101	78	2	487	27	20	17	34	1.95
1123620--1124120	201	2.5	200	81	4	576	27	19	17	35	1.95
1146406--1146450	23	2.0	23	95	0	81	28	24	20	26	1.99

Tables:   1   2   3   4