genome.fa.s14898.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014898.1 Kokia drynarioides strain JFW-HI SEQ_129941, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1273188

Tables:   1   2   3   4   

This is table  2  of  4  ( 382 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346129--346252	29	4.5	29	77	13	127	39	2	8	50	1.45
346085--346223	51	2.7	51	92	1	235	38	2	10	48	1.53
347612--347649	6	6.3	6	93	0	67	36	50	13	0	1.42
347606--347649	18	2.4	18	92	3	70	40	47	11	0	1.39
351709--351778	29	2.4	29	85	4	97	41	4	7	47	1.50
353116--353150	18	1.9	19	88	11	56	40	5	0	54	1.24
357988--358026	17	2.3	17	91	8	62	38	0	0	61	0.96
357982--358052	28	2.5	28	80	15	76	39	0	0	60	0.97
361309--361351	23	2.0	22	86	13	63	16	4	9	69	1.31
362315--362389	20	3.8	19	77	8	62	32	5	13	49	1.64
362354--362399	20	2.2	21	88	7	67	36	8	6	47	1.60
362729--362960	75	3.0	75	88	7	310	38	17	1	42	1.58
369697--369821	62	2.0	62	95	0	223	40	20	21	17	1.92
372248--372727	240	2.0	238	90	3	748	42	14	7	35	1.73
373842--374214	29	12.8	29	78	8	355	35	3	27	33	1.74
373777--374205	87	4.9	87	79	6	408	34	3	28	33	1.74
374704--374732	9	3.2	9	100	0	58	10	10	0	79	0.94
375176--375239	25	2.5	26	84	2	85	31	3	3	62	1.26
376013--376068	17	3.5	15	80	7	51	51	1	3	42	1.29
376051--376091	22	2.0	22	85	9	59	58	2	2	36	1.24
376437--376631	86	2.3	86	85	0	264	25	25	15	33	1.95
376778--376992	115	1.9	115	94	1	378	21	22	20	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387024--387048	2	12.5	2	100	0	50	48	0	0	52	1.00
392105--392136	16	2.0	16	93	0	55	62	15	18	3	1.45
400810--400844	18	1.9	18	88	0	52	25	20	20	34	1.96
402312--402345	17	2.0	17	94	0	59	32	17	26	23	1.97
408817--408873	3	20.3	3	79	13	68	70	3	0	26	1.03
408786--408873	14	6.1	14	78	12	90	65	4	0	29	1.12
408817--408879	11	5.9	11	79	7	76	69	3	1	25	1.12
410689--410716	14	2.0	14	100	0	56	85	0	14	0	0.59
417366--417429	25	2.5	25	72	10	67	60	0	1	37	1.06
417517--417545	7	4.1	7	100	0	58	68	0	0	31	0.89
417584--417619	18	2.0	18	94	0	63	52	2	0	44	1.15
420442--420475	2	17.0	2	87	0	50	44	0	5	50	1.26
420485--420698	105	2.0	105	99	0	419	34	18	21	26	1.96
421825--421876	11	4.9	11	76	9	54	48	1	1	48	1.24
421825--421876	20	2.5	20	84	6	59	48	1	1	48	1.24
421998--422058	30	2.0	30	96	0	113	27	11	29	31	1.92
423869--423929	29	2.1	29	90	0	95	32	11	9	45	1.73
424077--424193	57	2.0	58	95	1	209	37	11	8	41	1.73
427701--427939	52	4.6	52	90	0	388	35	25	13	25	1.92
428480--428515	18	2.1	16	90	10	54	30	16	0	52	1.44
428932--428964	16	2.1	16	94	0	57	24	18	3	54	1.57
431617--431747	58	2.3	59	78	2	140	41	9	20	27	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431663--431779	59	2.0	59	81	6	139	41	6	23	29	1.80
431734--431902	29	5.8	29	74	10	164	32	2	25	39	1.71
431744--431903	58	2.7	59	88	4	234	30	3	25	40	1.71
433580--433642	28	2.2	30	75	16	71	15	6	33	44	1.72
433742--433801	17	3.5	16	80	11	57	51	3	5	40	1.40
443377--443424	13	3.6	12	77	22	51	4	12	0	83	0.79
443376--443438	32	2.0	31	85	14	85	6	15	0	77	0.96
446322--446361	21	2.0	21	90	5	64	67	7	12	12	1.41
463814--463860	23	2.0	23	100	0	94	36	8	12	42	1.74
467445--467502	21	2.8	21	78	5	55	50	0	0	50	1.00
473745--473784	20	2.0	20	85	9	55	77	5	2	15	1.04
473909--474029	60	2.0	60	93	0	206	28	20	17	33	1.95
487609--487729	60	2.0	60	95	0	215	36	30	4	28	1.78
490080--490128	9	5.4	9	87	0	71	36	2	38	22	1.66
490271--490349	23	3.4	23	83	0	104	11	7	26	54	1.63
490286--490380	12	8.2	12	72	6	70	9	7	25	57	1.56
490297--490391	35	2.7	34	75	4	100	9	7	25	57	1.56
490634--490681	26	1.9	24	87	8	69	39	2	4	54	1.32
491470--491585	20	5.8	20	74	9	94	43	21	23	11	1.84
491484--491597	40	2.9	39	85	3	131	42	21	22	13	1.88
491527--491616	20	4.5	20	82	0	99	37	20	28	13	1.90
494703--494735	17	1.9	17	93	0	57	78	3	0	18	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
494703--494751	17	2.9	16	84	6	53	71	6	4	18	1.23
499015--499227	84	2.5	84	82	0	255	24	19	18	37	1.94
499023--499204	42	4.3	42	84	0	229	21	20	20	37	1.95
500497--500604	19	5.8	18	70	20	71	53	1	1	42	1.22
500529--500603	37	2.1	36	87	7	107	56	2	1	40	1.22
501867--501897	16	1.9	16	93	0	53	70	6	9	12	1.31
503538--503572	18	1.9	18	94	0	61	57	0	0	42	0.99
510377--510447	37	2.0	35	83	10	90	56	4	1	38	1.28
531549--531578	14	2.2	14	94	5	53	36	10	23	30	1.87
535162--535223	24	2.6	24	86	0	97	24	9	6	59	1.52
538575--538604	16	1.9	15	93	6	51	40	3	23	33	1.71
539833--539857	8	3.1	8	100	0	50	48	0	24	28	1.52
564745--564792	21	2.3	20	86	13	62	27	14	25	33	1.94
571956--572008	21	2.6	19	75	16	52	30	11	24	33	1.90
579161--579194	10	3.3	10	87	4	50	0	20	0	79	0.73
579765--579823	17	3.4	17	79	11	50	50	15	15	18	1.78
579792--579830	18	2.2	17	90	4	60	53	12	17	15	1.72
588100--588130	16	1.9	16	93	0	53	61	0	16	22	1.34
589044--589146	37	2.8	37	82	8	120	20	18	29	32	1.96
589082--589167	37	2.3	37	86	4	111	22	19	29	29	1.98
607923--607984	30	2.2	29	88	8	92	19	8	29	43	1.79
610093--610146	24	2.3	22	81	12	63	53	5	11	29	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
616110--616157	16	2.8	18	84	6	64	2	18	2	77	0.97
624605--624634	14	2.2	14	94	5	53	36	10	23	30	1.87
626304--626415	55	2.0	55	98	0	215	23	11	17	47	1.80
630388--630439	18	2.9	18	77	13	54	17	19	28	34	1.94
640156--640238	41	2.0	41	97	0	157	37	16	8	37	1.80
641751--641940	81	2.3	81	88	0	281	34	27	17	20	1.95
646385--646435	20	2.5	20	90	0	75	47	9	7	35	1.66
648225--648287	24	2.6	24	84	0	90	53	9	11	25	1.66
650205--650253	24	2.0	24	84	0	62	59	12	6	22	1.55
650215--650265	24	2.1	24	85	0	66	60	11	7	19	1.55
650793--650967	75	2.3	75	87	1	244	37	21	18	22	1.94
651653--651781	42	3.1	41	81	9	149	35	16	27	20	1.94
651704--651831	42	3.1	42	81	6	129	37	21	21	19	1.94
652364--652407	21	2.0	22	83	12	56	65	9	4	20	1.38
655325--655369	6	7.5	6	100	0	90	53	15	0	31	1.43
661343--661768	43	10.0	43	78	4	351	29	16	24	28	1.97
661341--661768	85	5.0	86	80	2	461	29	16	25	28	1.97
661449--661775	171	1.9	173	84	3	419	29	16	24	29	1.97
664524--664753	52	4.4	52	91	0	361	22	13	27	36	1.92
674100--674213	59	1.9	59	87	3	167	50	10	4	35	1.57
679773--679856	42	2.0	42	100	0	168	30	19	19	30	1.96
685952--685995	22	2.0	22	83	16	56	36	15	2	45	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
686012--686051	20	2.0	20	100	0	80	35	35	0	30	1.58
690228--690382	26	6.0	26	84	0	184	34	16	23	25	1.95
690228--690382	78	2.0	78	84	5	206	34	16	23	25	1.95
709424--709465	21	2.0	21	85	0	57	78	0	19	2	0.86
709437--709465	15	2.0	15	93	6	51	82	0	17	0	0.66
723889--723916	3	9.3	3	100	0	56	67	32	0	0	0.91
730418--730474	17	3.4	17	70	15	55	17	22	10	49	1.77
731028--731057	15	1.9	16	93	6	53	86	0	13	0	0.57
734339--734371	11	2.8	12	86	13	50	0	18	0	81	0.68
734339--734371	6	5.5	6	86	13	50	0	18	0	81	0.68

Tables:   1   2   3   4