genome.fa.s15263.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015263.1 Kokia drynarioides strain JFW-HI SEQ_130308, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1369056

Tables:   1   2   3   4   

This is table  2  of  4  ( 470 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317412--317446	5	7.0	5	96	0	61	57	20	0	22	1.41
322974--323003	6	5.0	6	95	0	51	13	33	0	53	1.40
334125--334184	30	2.0	30	86	0	84	60	1	3	35	1.23
347311--347348	3	12.7	3	94	0	67	0	28	34	36	1.58
347404--347437	12	2.8	12	86	0	50	0	17	32	50	1.47
348273--348307	8	4.2	8	96	3	61	60	0	0	40	0.97
352189--352220	3	10.7	3	100	0	64	31	0	0	68	0.90
355433--355480	14	3.6	14	78	18	57	27	2	2	68	1.11
361830--361887	6	9.5	6	81	3	62	17	6	0	75	1.01
361830--361894	14	4.6	13	72	20	51	16	7	0	75	1.03
363573--363639	27	2.5	27	95	0	116	26	8	4	59	1.47
363912--363961	26	2.0	25	88	4	73	28	10	2	60	1.40
363914--363971	26	2.2	25	81	6	62	31	5	1	62	1.27
371531--371625	50	1.9	50	100	0	190	30	15	7	46	1.73
376139--376625	38	12.6	38	74	7	144	36	22	13	27	1.91
376178--376984	78	10.4	79	71	11	346	37	21	14	27	1.91
376064--376690	116	5.4	117	76	6	508	37	21	13	28	1.91
376334--376482	40	3.8	39	79	3	149	38	20	12	28	1.90
376218--376499	156	1.8	157	84	3	390	37	21	13	28	1.91
376374--376916	192	2.8	191	78	7	562	37	20	14	28	1.91
376201--376942	38	19.2	38	66	15	138	37	20	13	27	1.91
378866--378934	25	2.7	25	80	10	77	26	10	1	62	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
378866--378934	26	2.8	24	80	10	68	26	10	1	62	1.35
378875--378938	26	2.6	25	85	5	85	31	7	1	59	1.35
378891--378948	26	2.2	25	81	6	62	32	3	1	62	1.22
383252--383289	6	6.2	6	82	17	51	31	0	0	68	0.90
383252--383289	11	3.1	12	85	14	51	31	0	0	68	0.90
383248--383294	14	3.5	14	77	19	55	29	2	0	68	1.02
389863--389910	20	2.4	18	78	18	51	50	0	2	47	1.12
390293--390526	121	1.9	121	91	0	378	17	21	15	44	1.86
390921--391027	40	2.7	39	91	5	171	52	0	0	46	1.06
390960--391036	20	4.0	19	70	14	68	50	1	1	46	1.17
390960--391036	29	2.7	28	75	13	84	50	1	1	46	1.17
391685--391760	3	27.0	3	75	12	63	65	0	31	2	1.06
391687--391747	25	2.4	25	81	10	88	68	0	27	3	1.05
391685--391746	11	5.3	11	75	17	54	69	0	27	3	1.04
392731--392770	21	1.9	21	89	0	62	30	20	17	32	1.95
393569--393608	21	2.0	21	85	5	55	60	0	25	15	1.35
395098--395165	31	2.2	31	86	5	93	39	10	2	47	1.53
398036--398120	41	2.1	41	81	0	98	27	34	22	16	1.95
400210--400266	29	2.0	29	82	6	71	17	7	21	54	1.66
405797--405980	43	4.3	42	86	2	197	38	9	21	30	1.85
405797--406005	86	2.4	85	82	4	224	37	10	22	29	1.88
405794--406005	43	4.9	43	84	3	196	37	10	22	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407450--407643	26	7.5	26	79	6	83	30	26	13	28	1.94
407475--407697	78	2.9	78	89	0	320	29	27	14	28	1.95
407477--407697	26	8.5	26	81	5	214	29	27	14	28	1.96
409478--409527	20	2.5	20	81	15	50	44	0	16	40	1.47
413748--413868	41	2.9	41	82	3	134	39	12	22	25	1.89
413770--413906	42	3.3	42	83	1	141	39	13	24	21	1.90
420925--421063	42	3.3	42	85	0	197	39	10	24	25	1.87
425448--425499	21	2.5	21	81	6	61	50	34	0	15	1.45
432303--432362	24	2.5	24	76	15	61	26	40	18	15	1.90
436620--436682	26	2.4	27	82	15	78	41	6	9	42	1.63
436914--437076	24	6.8	24	85	1	220	34	15	30	19	1.93
436914--437080	72	2.3	71	88	1	253	35	15	29	19	1.93
439181--439246	28	2.3	28	84	10	80	36	3	24	36	1.71
440515--440572	29	2.0	29	90	6	91	24	6	18	50	1.72
442759--442890	66	2.0	65	82	1	156	36	15	12	35	1.85
444925--444985	22	2.8	22	90	7	90	72	0	11	16	1.13
444951--444980	15	1.9	16	93	6	53	70	0	13	16	1.18
446650--446704	2	28.0	2	89	10	87	49	0	1	49	1.11
449378--449472	44	2.2	44	94	0	163	24	6	23	46	1.75
453532--453672	76	1.9	76	86	0	201	37	29	12	20	1.89
464022--464116	47	2.0	47	100	0	190	46	11	14	27	1.79
464704--464804	53	1.9	53	89	0	157	23	14	34	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
477700--477758	31	1.9	31	92	0	100	28	22	11	37	1.89
481550--481606	4	14.2	4	84	0	78	22	3	24	49	1.66
483875--483947	30	2.4	30	79	0	83	36	8	19	35	1.81
483963--484022	30	2.1	30	84	6	79	43	3	15	38	1.63
489249--489316	31	2.3	30	79	5	75	50	4	1	44	1.31
489663--489732	23	3.0	23	78	2	77	45	15	8	30	1.76
499666--499726	22	2.9	21	83	13	72	73	1	8	16	1.14
499692--499721	15	1.9	16	93	6	53	70	0	13	16	1.18
503296--503335	21	1.9	21	89	0	62	27	20	12	40	1.88
504647--504707	21	2.9	21	88	9	88	72	0	11	16	1.13
504673--504702	15	1.9	16	93	6	53	70	0	13	16	1.18
536288--536329	3	14.0	3	80	9	50	59	0	35	4	1.19
543259--543303	18	2.3	20	78	21	60	42	2	4	51	1.34
544747--544793	19	2.5	19	79	6	60	53	0	2	44	1.12
545385--545423	21	1.9	21	85	15	55	15	2	28	53	1.55
545469--545556	6	15.2	6	68	19	53	46	1	3	48	1.26
545469--545550	17	4.8	17	76	1	83	46	1	3	48	1.27
547419--547734	30	10.8	29	73	14	206	34	25	1	38	1.64
547393--547734	59	5.8	58	82	6	368	34	25	1	38	1.66
547419--547792	59	6.4	56	79	13	266	33	25	2	38	1.69
547414--547906	29	16.8	30	69	16	225	33	25	3	37	1.73
547708--547906	59	3.4	59	85	4	244	32	25	6	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
554298--554342	6	7.5	6	89	0	63	22	31	0	46	1.52
556000--556054	27	2.0	27	100	0	110	29	18	3	49	1.64
558118--558176	31	1.9	31	86	13	86	64	8	0	27	1.22
560007--560045	21	1.9	20	89	5	60	25	20	7	46	1.77
560107--560191	42	2.0	42	97	0	161	41	12	11	34	1.80
562467--562782	30	10.8	29	73	14	206	34	25	1	38	1.64
562441--562782	59	5.8	58	82	6	368	34	25	1	38	1.66
562467--562840	59	6.4	56	79	13	266	33	25	2	38	1.69
562462--562954	29	16.8	30	69	16	225	33	25	3	37	1.73
562756--562954	59	3.4	59	85	4	244	32	25	6	35	1.81
569346--569384	6	6.5	6	87	0	51	23	30	0	46	1.53
571042--571096	27	2.0	27	100	0	110	29	18	3	49	1.64
573160--573218	31	1.9	31	86	13	86	64	8	0	27	1.22
575049--575087	21	1.9	20	89	5	60	25	20	7	46	1.77
575149--575233	42	2.0	42	97	0	161	41	12	11	34	1.80
577012--577210	98	2.0	98	99	0	389	35	17	19	28	1.94
580068--580092	6	4.2	6	100	0	50	0	16	52	32	1.44
587876--587927	17	3.1	17	73	13	54	50	17	13	19	1.78
589695--589796	27	3.5	29	73	18	95	26	15	9	48	1.76
590266--590329	31	2.1	31	87	0	92	35	14	9	40	1.78
598158--598384	29	7.8	29	80	4	215	32	5	25	36	1.79
598106--598359	88	2.9	88	76	9	232	33	7	24	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
598161--598535	29	12.9	29	71	9	176	34	5	25	35	1.78
600338--600428	17	5.4	17	81	0	110	54	6	1	37	1.34
602533--602591	24	2.5	24	82	0	73	50	10	11	27	1.71
602545--602595	24	2.1	24	88	0	75	58	7	9	23	1.56
606823--606863	6	6.8	6	82	0	55	53	14	0	31	1.41
606821--606856	18	2.0	18	94	0	63	58	13	0	27	1.36
607190--607230	19	2.0	21	86	9	59	36	17	21	24	1.94
614346--614453	37	2.8	38	88	5	155	54	5	3	36	1.41
614504--614640	68	2.0	68	95	0	247	27	8	16	48	1.74
615938--616075	20	6.5	21	70	18	65	7	3	18	69	1.28

Tables:   1   2   3   4