genome.fa.s15263.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015263.1 Kokia drynarioides strain JFW-HI SEQ_130308, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1369056

Tables:   1   2   3   4   

This is table  4  of  4  ( 470 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
947016--947065	3	16.7	3	95	0	91	68	2	0	30	1.01
954292--954342	21	2.4	21	86	0	66	27	11	31	29	1.92
954309--954360	21	2.5	21	87	6	70	28	17	21	32	1.96
963254--963311	21	2.8	21	86	5	82	32	15	20	31	1.94
966045--966084	21	1.9	21	85	10	55	15	27	22	35	1.94
970606--970657	26	2.0	26	92	0	86	26	23	23	26	2.00
971839--971905	17	3.9	16	75	7	62	50	16	17	14	1.78
974858--974973	37	3.1	37	82	0	142	23	14	31	31	1.94
975747--975785	11	3.4	11	82	10	51	10	2	2	84	0.81
980054--980115	25	2.5	25	86	2	81	25	8	25	40	1.83
985458--985546	43	2.1	43	100	0	178	28	16	11	43	1.82
985715--985760	22	2.0	25	87	12	71	63	2	23	10	1.38
986656--986816	9	16.8	9	68	17	58	62	2	5	29	1.31
986665--986740	29	2.6	30	78	12	86	65	0	3	30	1.10
986726--986788	29	2.2	30	83	13	87	61	4	4	28	1.36
986755--986827	21	3.6	21	80	10	62	64	1	6	27	1.27
986677--986830	69	2.2	69	79	8	154	62	1	5	29	1.30
986762--986830	19	3.5	20	76	7	61	62	1	7	28	1.31
987042--987155	9	12.7	9	66	17	58	35	3	0	59	1.20
987045--987124	28	2.9	27	73	12	74	40	3	0	56	1.17
987247--987485	84	2.8	85	77	7	209	40	8	12	38	1.73
996910--996968	5	11.8	5	79	12	59	11	23	0	64	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
996909--997004	5	19.6	5	71	8	54	10	20	0	68	1.18
997547--997696	74	2.0	74	92	0	246	40	14	12	33	1.82
1003336--1003426	5	18.0	5	77	6	67	6	19	1	72	1.13
1003336--1003426	25	3.6	25	79	5	85	6	19	1	72	1.13
1003382--1003425	16	2.9	15	86	6	70	0	13	2	84	0.73
1003336--1003425	35	2.7	35	83	10	100	6	18	1	73	1.11
1003965--1004114	74	2.0	74	94	0	264	38	15	13	33	1.86
1015428--1015471	22	2.0	22	86	4	61	20	40	22	15	1.90
1015617--1015653	8	4.3	9	80	13	51	29	2	0	67	1.04
1015607--1015652	16	2.8	16	84	12	58	28	4	0	67	1.10
1015606--1015664	25	2.3	25	83	16	77	32	3	0	64	1.10
1015606--1015671	16	3.9	15	76	18	51	31	3	0	65	1.08
1021797--1021845	20	2.5	20	86	6	64	38	6	14	40	1.71
1043442--1043481	21	1.9	21	85	10	55	60	2	37	0	1.11
1043917--1043955	17	2.3	17	86	0	51	20	12	12	53	1.71
1053991--1054053	26	2.4	26	81	5	74	33	15	17	33	1.92
1054664--1054720	21	2.7	21	83	0	69	33	26	15	24	1.95
1055467--1055805	52	6.6	52	86	1	466	34	23	14	27	1.94
1059691--1059729	5	7.6	5	82	5	51	23	0	2	74	0.94
1060669--1060696	2	14.0	2	100	0	56	50	0	0	50	1.00
1066424--1066651	52	4.4	52	90	0	357	34	24	15	25	1.95
1069891--1069934	22	2.0	22	95	0	79	38	13	11	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1071790--1072023	52	4.5	52	87	1	317	36	25	14	24	1.93
1073012--1073042	16	1.9	16	93	0	53	25	19	3	51	1.62
1077650--1077682	16	2.1	16	94	0	57	24	18	3	54	1.57
1083010--1083051	18	2.3	19	87	4	68	7	4	4	83	0.91
1086987--1087017	14	2.2	14	94	0	53	67	0	16	16	1.23
1093303--1093380	38	2.1	38	97	0	147	19	26	20	33	1.96
1094143--1094183	17	2.4	18	80	12	50	58	9	9	21	1.59
1102009--1102052	20	2.2	20	83	4	52	70	9	6	13	1.33
1114419--1114458	21	2.0	21	95	5	73	47	15	12	25	1.80
1135901--1136003	43	2.4	43	90	0	161	22	24	22	31	1.99
1147171--1147208	15	2.6	16	88	12	55	68	0	0	31	0.90
1147165--1147210	23	2.0	24	83	12	60	65	0	0	34	0.93
1149900--1150002	34	3.0	34	100	0	206	26	11	15	46	1.80
1153428--1153460	15	2.1	17	88	11	52	66	6	0	27	1.15
1155978--1156024	16	2.9	16	72	15	51	31	0	0	68	0.90
1165994--1166028	18	2.0	18	88	5	54	42	11	17	28	1.83
1175005--1175072	35	1.9	35	84	0	91	48	2	2	45	1.32
1175004--1175101	35	2.7	34	78	12	90	51	2	2	44	1.24
1181954--1181978	5	5.0	5	100	0	50	60	20	0	20	1.37
1185926--1185953	13	2.2	13	100	0	56	89	0	10	0	0.49
1192083--1192109	2	13.5	2	100	0	54	48	0	0	51	1.00
1197524--1197558	18	1.9	18	94	0	61	34	31	17	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1202855--1202928	35	2.1	35	84	0	94	31	9	18	40	1.83
1204333--1204495	53	3.1	53	97	0	299	25	14	27	32	1.94
1205506--1205560	25	2.2	24	75	12	58	54	3	1	40	1.28
1213855--1214723	228	3.8	228	84	1	988	29	25	24	20	1.99
1213830--1214723	456	2.0	456	82	0	1117	29	25	24	20	1.99
1215186--1215239	26	2.1	25	86	3	72	44	3	1	50	1.30
1217903--1217934	4	8.0	4	100	0	64	75	0	0	25	0.81
1218007--1218036	15	2.0	15	100	0	60	26	20	13	40	1.89
1231231--1231310	23	3.5	24	77	11	78	11	25	22	41	1.87
1233025--1233054	4	7.5	4	92	0	51	26	20	0	53	1.46
1235705--1235934	95	2.4	95	83	6	284	29	14	18	38	1.90
1238967--1239012	13	3.6	13	75	13	51	54	2	0	43	1.12
1240005--1240104	30	3.3	30	90	0	146	1	43	19	37	1.58
1240144--1240235	40	2.3	40	86	0	121	20	21	30	27	1.98
1240159--1240236	40	2.0	40	92	0	129	21	23	32	23	1.98
1240235--1240313	41	1.9	41	89	0	122	18	30	32	17	1.95
1246056--1246080	5	5.0	5	100	0	50	80	0	0	20	0.72
1247092--1247148	18	3.2	17	82	7	69	52	0	0	47	1.00
1247102--1247147	20	2.2	20	84	3	56	54	0	0	45	0.99
1254168--1254211	16	2.6	17	82	3	54	27	0	2	70	0.99
1255168--1255209	22	1.9	22	85	0	57	33	11	11	42	1.78
1267373--1267418	22	2.0	22	87	4	65	47	6	0	45	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1267760--1267798	15	2.5	16	91	4	62	48	0	7	43	1.31
1269550--1269574	6	4.2	6	100	0	50	16	32	20	32	1.94
1283456--1283928	247	1.9	249	91	0	779	37	18	21	22	1.94
1289219--1289310	46	2.0	46	97	0	175	58	17	9	14	1.62
1292523--1292566	20	2.2	20	87	0	61	25	11	9	54	1.65
1294469--1294601	52	2.6	52	87	9	177	52	1	3	42	1.25
1299769--1299817	24	2.0	24	100	0	98	22	12	36	28	1.90
1306556--1306711	73	2.1	73	97	0	294	25	20	15	39	1.91
1307876--1307925	22	2.3	22	93	6	84	20	32	8	40	1.81
1312027--1312074	22	2.2	22	100	0	96	43	4	16	35	1.67
1312928--1313760	75	11.1	75	81	7	854	25	18	25	30	1.98
1312988--1313793	219	3.6	217	80	6	798	26	18	25	29	1.98
1317689--1317762	32	2.3	33	81	9	89	36	0	6	56	1.26
1317696--1317762	34	2.0	34	86	11	95	35	0	7	56	1.27
1319031--1319106	31	2.6	29	80	12	82	53	1	1	43	1.17
1321127--1321152	6	4.3	6	100	0	52	34	0	15	50	1.45
1322549--1322574	2	13.0	2	100	0	52	50	0	0	50	1.00
1331241--1331364	59	2.1	59	81	0	149	44	14	20	20	1.86
1343910--1344038	61	2.1	61	83	8	156	44	8	12	34	1.73
1361380--1361448	31	2.2	31	84	0	84	33	7	11	47	1.67
1367807--1367953	23	6.5	22	79	6	107	39	24	23	12	1.90
1368017--1368064	24	1.9	26	84	16	66	31	22	0	45	1.53

Tables:   1   2   3   4

The End!