genome.fa.s15296.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015296.1 Kokia drynarioides strain JFW-HI SEQ_130341, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  852674

Tables:   1   2   3   

This is table  2  of  3  ( 354 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348347--348380	9	3.8	9	88	0	50	88	2	5	2	0.70
349978--350032	23	2.3	24	90	3	85	72	5	20	1	1.13
355962--356242	152	1.8	152	99	0	553	20	16	19	43	1.88
356208--356256	26	1.9	25	95	4	89	20	18	2	59	1.48
358721--358877	80	2.0	79	89	1	242	34	21	16	28	1.95
361580--361671	33	2.8	32	76	16	80	67	6	21	4	1.32
363916--363958	6	7.2	6	100	0	86	16	18	65	0	1.28
364172--364341	48	3.5	48	92	0	259	24	8	12	54	1.67
364788--364937	80	1.9	80	87	5	223	35	20	16	28	1.93
365452--365594	50	2.8	50	84	3	178	36	13	15	34	1.86
365636--365700	33	1.9	34	87	3	96	44	9	13	32	1.76
365796--365828	17	1.9	17	88	11	50	66	6	0	27	1.15
367190--367223	18	1.9	17	88	5	50	5	26	2	64	1.30
367252--367302	20	2.4	21	80	9	59	5	33	0	60	1.21
367249--367308	26	2.4	23	78	13	57	6	28	0	65	1.18
368275--368331	19	2.9	19	80	12	62	15	14	7	63	1.51
368286--368331	20	2.3	20	85	10	60	13	15	8	63	1.52
369516--369658	50	2.8	50	80	2	160	37	12	13	36	1.83
370795--370864	30	2.3	30	77	0	77	28	28	21	21	1.99
370951--374757	216	17.4	216	73	11	2215	41	14	16	27	1.87
371507--372106	197	2.9	197	79	8	503	41	15	16	27	1.87
372251--372366	58	2.0	58	100	0	232	43	17	8	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372317--374757	215	11.3	216	82	5	2592	41	14	16	27	1.87
372317--374757	431	5.6	430	82	5	2715	41	14	16	27	1.87
376876--376968	18	4.8	19	73	12	75	73	2	20	4	1.11
380073--380193	48	2.5	47	90	1	179	24	9	13	52	1.69
382320--382768	236	1.9	233	83	3	587	40	13	16	29	1.86
381181--385689	431	10.4	431	81	5	4870	41	13	16	28	1.87
381181--385711	216	20.9	216	80	6	4414	40	13	16	28	1.87
384487--384531	22	2.0	22	91	0	72	42	4	17	35	1.70
387178--388193	214	4.7	214	84	3	1211	40	14	16	28	1.88
387183--388193	429	2.4	428	86	4	1376	40	14	16	28	1.87
388517--388641	48	2.6	48	88	2	178	23	9	13	53	1.69
390027--390055	15	1.9	15	100	0	58	13	17	41	27	1.87
391557--391891	178	1.9	172	82	7	412	42	13	18	25	1.87
391769--393445	216	7.8	215	82	4	1763	41	14	17	27	1.88
391788--393445	863	1.9	864	82	4	2061	41	13	17	27	1.88
395196--395234	19	2.0	20	90	5	62	53	10	7	28	1.62
394887--395898	215	4.7	215	81	4	1099	40	13	17	28	1.88
396874--396992	48	2.5	48	87	1	168	52	13	8	25	1.68
399464--399582	6	19.3	6	66	14	55	4	21	4	70	1.21
404063--404105	24	1.9	23	86	13	63	13	11	4	69	1.33
404801--404938	50	2.7	51	76	11	131	36	12	15	35	1.86
405333--412702	216	34.4	215	77	6	6318	40	13	18	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411908--412253	191	1.8	191	85	2	489	39	13	18	28	1.88
413238--413388	74	2.0	75	93	1	259	39	13	13	33	1.84
415500--415539	18	2.2	19	90	4	64	20	22	27	30	1.98
417719--417796	16	4.9	16	68	12	52	11	19	3	65	1.40
417912--417957	18	2.6	17	86	6	65	8	21	2	67	1.29
418835--418864	3	10.0	3	100	0	60	0	33	0	66	0.92
421634--422691	533	2.0	533	87	3	1529	34	17	18	29	1.94
423090--423131	19	2.1	21	86	8	61	14	11	16	57	1.66
425999--426028	15	2.0	15	93	0	51	33	30	20	16	1.94
430703--430749	25	1.9	24	87	12	69	57	12	10	19	1.64
437937--437988	18	2.9	18	74	25	56	3	26	0	69	1.06
437951--438031	31	2.7	29	73	17	83	4	27	1	66	1.19
437937--438005	11	5.9	11	71	18	50	4	27	1	66	1.19
437954--438031	29	2.5	31	76	15	90	5	26	1	66	1.20
448009--448261	30	8.3	30	76	4	195	37	3	24	34	1.72
448014--448247	60	3.9	60	82	2	247	38	2	24	35	1.69
449226--449259	11	3.2	11	87	4	52	29	0	0	70	0.87
449757--449807	23	2.1	24	85	7	68	15	3	29	50	1.62
450320--450515	39	5.1	38	70	8	135	22	20	32	23	1.98
450320--450524	78	2.6	77	79	3	214	22	20	32	24	1.98
453604--453630	3	9.0	3	100	0	54	0	33	0	66	0.92
464193--464396	30	6.8	30	87	5	252	39	1	22	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466037--466075	6	6.7	6	83	16	55	51	0	0	48	1.00
466039--466070	16	2.0	16	100	0	64	56	0	0	43	0.99
466170--466204	15	2.3	15	90	9	54	25	31	22	20	1.98
466433--466476	15	2.9	15	86	6	54	27	22	29	20	1.99
468604--468741	18	8.6	16	66	22	58	11	23	2	61	1.43
469857--469889	17	1.9	17	88	11	50	66	6	0	27	1.15
470051--472235	216	10.2	216	81	4	2356	29	17	13	39	1.88
470051--472235	431	5.1	430	80	5	2364	29	17	13	39	1.88
473980--474020	6	6.8	6	82	0	55	2	14	2	80	0.92
473972--474020	24	2.0	24	92	0	80	4	16	4	75	1.11
473979--474027	24	2.0	24	88	0	71	4	14	8	73	1.21
475739--476541	216	3.7	213	79	6	837	29	17	13	39	1.88
480212--480250	13	2.9	14	80	7	53	66	0	28	5	1.12
487297--489252	216	9.1	215	80	4	1815	29	17	14	39	1.88
487295--489575	432	5.3	431	78	5	2211	29	17	13	39	1.88
487353--489575	648	3.5	644	79	5	2246	29	17	13	39	1.88
489052--489451	199	2.0	197	82	5	486	29	18	13	38	1.90
490095--490142	25	1.9	25	83	8	62	56	12	12	18	1.67
490710--490847	50	2.7	51	79	11	158	36	11	16	34	1.85
491036--491068	17	1.9	17	88	11	50	66	6	0	27	1.15
500795--500893	39	2.5	39	93	0	171	24	6	17	52	1.67
500939--501000	32	1.9	32	93	0	106	32	11	16	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507389--507487	39	2.5	39	90	0	162	27	5	15	52	1.63
507533--507595	32	2.0	32	90	0	99	33	11	17	38	1.85
515164--515277	50	2.3	49	80	7	133	36	11	15	35	1.84
515164--515305	50	2.9	49	73	13	121	37	12	13	36	1.83
516667--516702	3	12.0	3	100	0	72	0	33	0	66	0.92
516944--517853	216	4.2	216	82	4	1041	41	14	16	27	1.87
517679--518042	186	2.0	186	85	2	498	40	14	17	26	1.88
517865--518526	216	3.1	214	85	4	859	39	15	16	28	1.89
517264--518473	617	2.0	618	83	2	1565	40	14	17	27	1.89
518741--519674	216	4.4	216	83	3	1110	40	14	17	28	1.88
520323--520399	5	15.2	5	89	2	100	1	23	0	75	0.88
522021--522062	21	2.0	20	86	4	57	23	4	2	69	1.20
524591--524631	12	3.5	12	78	15	50	78	2	14	4	1.03
524585--524639	24	2.3	24	93	3	94	72	5	18	3	1.18
531133--531206	29	2.5	30	66	2	69	36	5	14	43	1.69
533340--533381	13	2.8	15	79	20	52	35	2	4	57	1.33
533373--533433	21	2.9	20	74	16	61	45	1	6	45	1.39
535383--535448	34	1.9	34	90	0	105	16	31	10	40	1.83
546534--546723	94	2.0	94	88	0	281	53	13	17	15	1.74
548564--548795	127	1.8	127	91	1	385	30	17	15	36	1.92
551529--551555	12	2.2	12	100	0	54	48	0	0	51	1.00
554098--554137	21	1.9	21	90	10	64	27	22	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
569166--569266	6	15.8	6	84	11	112	0	45	0	53	1.07
569148--569274	27	5.0	26	83	10	129	0	46	0	52	1.06
569154--569288	45	3.0	45	81	7	150	0	45	1	51	1.15
569146--569274	51	2.5	51	84	2	170	0	46	0	52	1.05
569211--569285	39	1.9	39	83	5	98	1	46	2	49	1.24
569150--569296	51	2.9	51	83	2	143	0	46	1	51	1.14
569601--569635	17	2.1	17	89	10	54	71	5	8	14	1.29
570330--570440	55	2.0	54	82	8	134	51	14	9	25	1.71
570504--570548	20	2.2	20	88	7	65	42	2	0	55	1.12
573638--573664	2	13.5	2	100	0	54	0	0	48	51	1.00

Tables:   1   2   3