genome.fa.s15299.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015299.1 Kokia drynarioides strain JFW-HI SEQ_130344, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1333876

Tables:   1   2   3   4   

This is table  2  of  4  ( 394 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305697--305739	13	3.2	13	87	9	59	39	20	20	18	1.93
305768--305870	47	2.2	47	96	1	190	17	5	31	45	1.72
313379--313459	23	3.5	23	70	0	63	22	33	27	17	1.96
316554--316736	97	1.9	96	83	7	237	36	13	19	30	1.91
316977--317123	57	2.6	58	79	6	156	31	5	27	35	1.80
316972--317075	28	3.7	27	72	12	84	32	4	26	35	1.78
317127--317322	59	3.3	56	79	8	178	33	5	28	32	1.80
317069--317331	30	8.9	30	70	12	168	32	5	27	34	1.80
317110--317331	89	2.5	88	78	7	225	33	4	26	34	1.78
318395--318485	3	30.0	3	73	10	60	36	3	4	56	1.36
319142--319202	10	5.8	10	77	11	68	52	1	0	45	1.10
319149--319237	6	16.0	6	69	19	59	52	3	0	43	1.17
319155--319237	17	4.7	17	82	8	103	53	3	0	43	1.18
319155--319237	37	2.4	34	85	6	103	53	3	0	43	1.18
321242--321286	22	2.0	24	86	8	67	8	15	0	75	1.03
322768--322805	6	6.5	6	90	6	60	39	13	28	18	1.88
325069--325224	84	1.9	84	84	2	215	39	7	8	44	1.63
326072--326133	31	2.0	31	87	0	88	40	4	16	38	1.69
326270--326307	18	2.1	18	100	0	76	21	21	5	52	1.66
354655--354691	14	2.6	14	91	0	65	45	18	16	18	1.85
354880--354934	21	2.6	21	86	13	85	47	18	14	20	1.83
364217--364242	12	2.2	12	100	0	52	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365109--365180	31	2.4	31	79	11	78	45	16	13	23	1.83
366068--366139	30	2.4	31	81	6	85	20	11	18	50	1.77
373366--373431	33	2.0	33	100	0	132	30	15	9	45	1.77
375635--375660	2	13.0	2	100	0	52	50	0	0	50	1.00
376436--376466	2	15.5	2	100	0	62	51	0	0	48	1.00
386136--386206	26	2.8	25	70	12	63	46	2	2	47	1.31
387082--387130	25	2.0	24	92	8	80	51	0	0	48	1.00
390509--390564	18	3.1	19	85	12	73	37	0	3	58	1.15
393254--393281	3	9.3	3	100	0	56	67	0	32	0	0.91
396529--396562	10	3.5	10	92	4	52	11	26	0	61	1.30
403609--403651	20	2.2	20	86	0	59	13	23	11	51	1.74
419177--419307	38	3.0	43	72	18	112	41	2	3	52	1.29
419731--419798	32	2.1	33	88	2	102	8	5	47	38	1.59
420020--420136	41	2.9	41	83	6	148	17	30	18	32	1.95
422101--422203	21	4.9	21	75	15	88	6	2	18	71	1.20
422096--422248	33	4.7	33	73	10	136	7	3	19	69	1.26
422130--422279	11	13.5	11	67	14	69	5	3	20	70	1.21
422097--422181	41	2.0	41	86	6	118	4	2	20	72	1.13
422187--422278	12	7.9	12	78	11	75	5	3	22	68	1.25
422097--422203	43	2.5	42	81	11	103	6	2	18	71	1.20
422098--422274	22	8.0	22	71	14	82	6	3	20	69	1.25
422251--422292	20	2.0	21	86	4	59	7	2	23	66	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424082--424141	5	11.2	5	73	19	50	23	5	3	68	1.24
429674--429719	20	2.3	20	79	20	53	69	4	6	19	1.28
444989--445014	13	2.0	13	100	0	52	23	23	7	46	1.78
453646--453684	3	13.0	3	100	0	78	33	33	0	33	1.58
456753--456800	23	2.1	23	84	7	62	62	2	6	29	1.31
460908--461002	30	3.2	29	89	5	145	28	1	10	60	1.37
469782--469818	18	2.1	18	89	0	56	35	2	0	62	1.10
488905--488952	18	2.7	18	77	6	53	52	0	41	6	1.27
488923--488959	15	2.5	15	86	13	58	51	0	43	5	1.24
489278--489306	3	9.7	3	100	0	58	68	0	31	0	0.89
493914--493950	18	2.0	19	89	5	58	24	5	10	59	1.52
494823--494891	25	2.6	26	82	11	70	63	4	18	13	1.45
500155--500253	37	2.7	37	78	6	112	21	14	29	35	1.92
504727--504814	38	2.3	38	76	16	94	30	13	21	34	1.92
504727--504837	38	3.0	37	72	15	93	28	13	22	35	1.92
505690--505748	30	2.0	30	86	0	82	52	13	6	27	1.65
522986--523039	27	2.0	27	96	0	99	27	25	12	33	1.93
525640--525705	34	1.9	34	100	0	132	18	18	12	51	1.76
549655--549688	13	2.5	14	85	9	52	0	17	0	82	0.67
550269--550309	17	2.4	17	80	19	50	51	9	17	21	1.74
550723--550760	3	13.0	3	84	15	53	0	28	0	71	0.87
558988--559042	24	2.2	24	90	3	83	27	16	10	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
560227--560401	92	1.9	90	85	8	237	25	20	17	37	1.94
560704--560817	50	2.2	52	83	7	162	36	14	14	35	1.86
567581--567676	34	2.8	34	83	0	120	21	17	30	30	1.97
570307--570345	15	2.5	15	87	4	51	2	20	0	76	0.90
576707--576740	14	2.4	14	90	0	50	38	11	8	41	1.73
585043--585275	51	4.6	51	82	6	253	27	24	16	31	1.96
593150--593192	21	2.0	21	86	8	61	55	9	9	25	1.61
597963--598207	52	4.7	51	80	5	242	29	15	22	33	1.94
597963--598207	104	2.4	104	80	4	271	29	15	22	33	1.94
598688--598731	22	2.0	22	100	0	88	27	9	22	40	1.84
598844--598883	21	1.9	21	89	0	62	27	7	22	42	1.80
603066--603148	36	2.3	36	95	0	148	34	10	21	32	1.88
603543--603873	69	5.1	68	79	11	333	40	6	16	36	1.73
603610--603873	59	4.3	60	80	10	284	40	6	16	36	1.73
603543--603868	128	2.5	129	80	15	399	40	5	16	36	1.73
603787--603831	10	4.4	10	88	2	63	40	2	20	37	1.65
603830--603906	33	2.3	34	91	6	131	38	6	18	36	1.76
603796--603965	92	1.8	92	89	0	268	38	7	18	35	1.78
603889--604039	69	2.2	69	90	0	221	37	8	18	35	1.82
603669--603898	128	1.8	126	85	7	306	40	6	17	36	1.74
603948--603992	10	4.4	10	88	2	63	37	4	17	40	1.70
603702--604068	161	2.3	161	87	6	510	37	7	18	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
604020--604049	10	2.9	10	95	5	51	36	0	20	43	1.52
607255--607282	2	14.0	2	100	0	56	50	0	0	50	1.00
607682--607713	14	2.3	14	94	0	55	34	12	18	34	1.89
608806--608878	29	2.5	30	90	2	121	47	1	0	50	1.09
613299--613341	22	2.0	22	100	0	86	51	4	11	32	1.59
617199--617274	22	3.4	22	71	18	66	30	5	18	46	1.71
617136--617271	45	3.0	45	83	0	164	30	6	17	45	1.74
619020--619068	23	2.3	22	78	21	59	30	2	0	67	1.02
621074--621111	19	2.0	19	89	0	58	52	5	13	28	1.61
621159--621271	47	2.4	47	85	2	147	28	11	21	38	1.88
622610--622656	4	11.8	4	82	8	60	27	0	2	70	0.99
622617--622656	15	2.6	16	92	4	64	27	0	2	70	1.01
622610--622655	23	2.0	24	86	4	67	28	0	2	69	1.00
627767--627904	52	2.7	52	86	0	186	28	15	23	31	1.96
628667--628718	21	2.5	21	81	6	61	28	13	26	30	1.94
631983--632030	24	2.0	24	84	12	62	16	8	4	70	1.27
634260--634292	17	1.9	17	93	0	57	15	12	9	63	1.51
639754--639894	67	2.1	67	86	3	205	43	6	5	43	1.53
639825--640051	125	1.8	127	92	1	386	44	5	7	41	1.56
640037--640182	75	2.0	75	91	1	240	30	13	9	46	1.74
643933--643989	30	1.9	30	100	0	114	21	22	26	29	1.99
657991--658175	30	6.2	29	75	12	144	30	2	25	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
658001--658174	60	2.9	58	81	2	213	31	2	25	40	1.70
658012--658190	30	6.0	30	78	3	191	31	2	25	40	1.70
659174--659201	3	9.3	3	100	0	56	32	0	0	67	0.91
659574--659615	19	2.2	20	86	4	59	9	11	50	28	1.70
660167--660324	85	1.9	85	83	0	208	25	23	14	36	1.93
660376--660533	85	1.9	85	80	0	190	27	23	12	36	1.91
660160--660541	209	1.8	209	89	0	593	24	21	15	37	1.93
660665--661188	78	6.7	79	80	3	497	26	17	30	25	1.97
660736--661182	39	11.5	38	68	17	159	26	17	30	25	1.97
660635--661184	156	3.5	156	82	3	631	25	18	30	25	1.98

Tables:   1   2   3   4