genome.fa.s15299.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015299.1 Kokia drynarioides strain JFW-HI SEQ_130344, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1333876

Tables:   1   2   3   4   

This is table  3  of  4  ( 394 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
665436--665466	16	1.9	16	93	0	53	54	3	12	29	1.53
665632--665764	59	2.2	61	81	6	148	31	3	27	37	1.74
665649--665867	30	7.3	30	75	7	156	29	4	26	39	1.76
666853--666887	3	11.7	3	100	0	70	31	0	0	68	0.90
667869--668370	209	2.4	208	85	3	675	24	21	16	37	1.93
668505--668643	39	3.6	38	69	14	95	25	21	30	22	1.98
668463--668732	78	3.5	78	83	0	317	25	20	30	23	1.99
668543--668675	39	3.4	39	74	0	149	22	21	32	23	1.98
671764--671811	23	2.1	23	100	0	96	27	16	12	43	1.84
677911--678106	99	2.0	99	96	0	365	33	15	26	25	1.95
680013--680190	88	2.0	88	94	0	311	48	25	8	17	1.76
686594--686637	18	2.5	18	81	3	54	15	9	18	56	1.65
690147--690210	26	2.5	26	84	0	83	32	17	15	34	1.91
691319--691594	138	2.0	138	100	0	552	19	14	12	53	1.72
716829--716858	14	2.2	14	94	5	53	30	23	10	36	1.87
717160--717195	19	1.9	18	88	5	54	16	11	8	63	1.49
722807--722906	50	2.0	50	94	0	173	36	15	17	32	1.90
725598--725648	10	5.2	10	76	4	50	78	1	17	1	0.94
725598--725644	19	2.7	17	80	9	51	78	2	17	2	0.94
726421--726460	19	2.1	19	85	4	53	17	10	5	67	1.37
726835--726864	14	2.2	14	94	5	53	30	23	10	36	1.87
733161--733207	20	2.4	19	76	16	51	74	0	21	4	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
748765--748808	22	1.9	22	86	9	61	6	11	4	77	1.11
752161--752200	21	1.9	21	94	0	71	22	10	37	30	1.87
757683--757737	24	2.2	24	87	3	74	47	9	16	27	1.76
765790--766027	52	4.6	52	90	1	352	24	15	25	34	1.95
768140--768182	22	1.9	23	85	4	61	41	9	16	32	1.80
778838--778877	21	2.0	21	90	5	64	17	12	7	62	1.52
780514--780612	39	2.5	39	91	0	162	24	5	16	54	1.62
780658--780720	32	2.0	32	96	0	117	33	7	17	41	1.79
781018--781060	10	4.3	10	96	0	77	20	41	6	30	1.79
798464--798510	19	2.5	19	100	0	94	27	17	31	23	1.96
799422--799465	15	2.7	17	79	13	65	63	0	29	6	1.20
805043--805117	37	2.0	37	92	0	123	38	20	8	33	1.81
817150--817331	52	3.5	52	88	0	274	25	15	24	34	1.95
829217--829241	13	1.9	13	100	0	50	48	24	4	24	1.68
829514--829556	20	2.2	20	82	0	50	41	30	20	6	1.79
835724--835812	44	2.0	44	100	0	178	41	11	11	35	1.77
851846--851908	25	2.6	24	76	14	67	22	0	7	69	1.13
862859--862921	26	2.4	26	82	12	67	44	3	4	47	1.40
868834--868900	19	3.2	19	70	22	62	44	2	1	50	1.26
872960--873021	27	2.3	27	88	0	88	45	4	27	22	1.73
875403--875433	5	6.2	5	100	0	62	19	0	61	19	1.35
876205--876234	7	4.3	7	95	0	51	70	13	0	16	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
877458--877499	21	2.0	22	85	4	59	11	19	4	64	1.44
900980--901030	21	2.4	21	90	6	77	56	17	5	19	1.61
903583--903663	39	2.1	39	92	0	135	50	3	4	40	1.42
905994--906056	31	2.0	31	96	0	117	15	4	25	53	1.61
906361--906427	32	2.2	30	84	12	84	65	1	1	31	1.10
907351--907454	45	2.2	48	81	8	124	23	15	23	38	1.92
908723--908754	12	2.6	12	95	5	55	12	12	40	34	1.81
926544--926600	26	2.2	26	84	6	71	36	21	14	28	1.92
926639--926725	38	2.3	37	86	7	113	28	19	24	27	1.98
932801--932839	17	2.3	17	86	0	51	56	15	12	15	1.68
936024--936102	38	2.1	37	85	2	104	32	10	24	32	1.88
936035--936115	38	2.2	38	81	2	92	34	9	19	35	1.85
937694--937736	21	2.0	21	82	8	52	6	25	4	62	1.40
939710--939807	38	2.6	39	79	9	105	28	17	21	32	1.96
947323--947398	31	2.5	30	86	2	98	26	14	13	46	1.81
947599--947705	32	3.5	30	73	14	85	48	12	13	26	1.77
947960--948151	59	3.2	59	82	3	215	43	12	15	28	1.83
947387--948118	357	2.0	364	88	3	1093	38	12	12	36	1.80
956590--956791	81	2.5	80	87	4	291	35	11	28	24	1.91
961064--961578	255	2.0	255	98	0	994	30	18	14	37	1.90
969109--969154	23	2.0	24	91	4	76	8	6	6	78	1.10
969109--969154	24	2.0	23	86	4	65	8	6	6	78	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
972333--972391	12	4.8	12	80	16	59	3	18	0	77	0.90
972336--972393	26	2.2	26	85	11	75	3	20	0	75	0.94
973000--973136	40	3.3	41	71	11	118	34	20	29	15	1.93
973058--973507	41	11.0	41	82	3	503	31	21	30	16	1.95
973071--973507	206	2.1	205	84	1	561	31	21	30	16	1.96
979138--979282	43	3.4	42	74	7	114	25	13	26	33	1.94
982745--982944	100	2.0	100	100	0	400	21	20	16	43	1.88
985975--986004	14	2.2	14	94	5	53	36	10	23	30	1.87
995753--995965	106	2.0	106	96	0	390	28	24	16	30	1.96
1001695--1001774	36	2.2	36	82	8	92	42	13	22	21	1.88
1010113--1010314	80	2.5	78	87	6	278	31	25	18	24	1.98
1010370--1010403	16	2.1	16	94	0	59	38	17	14	29	1.90
1011885--1012056	36	4.8	36	91	0	245	38	12	27	21	1.90
1015104--1015387	43	6.5	43	83	6	288	34	10	21	33	1.87
1021306--1021513	44	4.8	43	84	8	244	34	9	25	30	1.88
1022179--1022215	18	2.1	18	100	0	74	35	27	10	27	1.90
1031151--1031199	24	2.1	24	84	3	64	22	12	12	53	1.71
1041166--1041276	37	3.0	37	100	0	222	32	13	13	40	1.84
1052681--1052848	81	2.1	81	98	0	327	46	19	14	19	1.84
1055178--1055227	12	4.2	12	89	5	75	24	0	2	74	0.93
1055175--1055226	3	17.7	3	80	11	63	25	0	1	73	0.94
1060006--1060081	40	1.9	40	86	0	107	27	26	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1063120--1063253	45	3.0	45	85	4	180	34	23	20	20	1.97
1063521--1063569	20	2.4	20	89	3	71	40	32	8	18	1.80
1064217--1064247	10	2.9	11	90	9	55	64	0	9	25	1.24
1074897--1075013	59	2.0	59	93	0	198	27	0	13	58	1.42
1076310--1076366	13	4.6	13	73	20	59	15	0	42	42	1.47
1085788--1085846	29	2.0	29	86	0	82	33	37	8	20	1.83
1088908--1089249	170	2.0	169	93	1	578	17	23	11	47	1.79
1089290--1090028	375	2.0	375	90	1	1176	32	21	16	29	1.96
1102740--1102805	18	3.7	18	91	0	105	18	21	25	34	1.96
1109309--1109407	18	5.4	18	80	2	117	20	20	26	33	1.97
1109309--1109400	37	2.5	36	80	3	94	20	19	26	33	1.96
1109309--1109424	55	2.1	55	87	3	162	21	19	26	31	1.97
1127036--1127081	23	2.0	23	95	0	83	21	15	13	50	1.78
1143382--1143451	27	2.5	28	74	19	67	51	37	0	11	1.38
1143483--1143558	27	2.8	27	75	0	89	23	28	21	26	1.99
1146402--1146556	80	1.9	80	89	0	238	23	21	25	28	1.99
1148280--1148324	21	2.1	21	87	0	63	26	11	20	42	1.85
1157662--1157691	2	15.0	2	100	0	60	50	0	50	0	1.00
1158369--1158416	14	3.1	16	79	14	55	52	0	2	45	1.12
1158371--1158424	17	3.4	15	80	17	56	48	1	1	48	1.23
1158787--1158845	29	2.0	30	83	3	75	28	5	15	50	1.65
1159172--1159225	26	2.1	26	85	0	72	38	12	22	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1159524--1159574	15	3.5	15	71	10	52	43	3	11	41	1.60
1159564--1159602	15	2.5	15	87	8	51	43	5	17	33	1.72
1159798--1159859	23	2.7	23	87	0	88	32	20	11	35	1.88
1161955--1162086	66	2.0	66	98	0	255	28	7	20	43	1.79
1165451--1165500	25	2.0	25	85	11	68	28	10	0	62	1.27
1165454--1165499	24	2.0	23	83	8	58	26	10	0	63	1.27
1166294--1166386	39	2.3	40	92	1	152	33	17	21	27	1.96
1168094--1168129	17	2.1	17	100	0	72	38	11	11	38	1.76
1171250--1171341	40	2.3	39	90	9	143	33	15	20	30	1.93
1179607--1179650	19	2.4	18	85	7	61	75	2	2	20	1.03

Tables:   1   2   3   4