Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015299.1 Kokia drynarioides strain JFW-HI SEQ_130344, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1333876

Tables:   1   2   3   4   

This is table  4  of  4  ( 394 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1179607--1179652
6
7.5
6
85
4
56
73
2
2
21
1.04
1181390--1181432
19
2.3
19
91
0
68
23
13
18
44
1.86
1196641--1196673
16
2.1
16
88
5
50
72
15
0
12
1.12
1198440--1198499
30
2.0
30
100
0
120
30
26
6
36
1.82
1198660--1198712
25
2.1
25
100
0
106
37
15
15
32
1.88
1203506--1203568
32
2.0
32
93
0
108
31
11
19
38
1.86
1206809--1206847
13
2.9
14
80
7
53
66
0
28
5
1.12
1208881--1209964
547
2.0
537
100
0
2078
29
18
23
28
1.97
1210621--1210683
32
2.0
32
87
6
92
31
11
17
39
1.85
1220813--1220853
18
2.3
18
87
8
57
80
2
17
0
0.82
1220813--1220855
9
4.6
9
80
8
50
81
2
16
0
0.79
1222208--1222346
39
3.6
39
77
0
107
21
28
20
28
1.98
1222364--1222827
208
2.2
208
90
0
723
37
16
21
23
1.93
1225075--1225126
22
2.4
22
96
0
95
17
9
7
65
1.45
1226346--1226408
24
2.6
26
78
14
64
3
33
0
63
1.10
1231989--1232021
16
2.1
16
88
11
50
30
30
18
21
1.97
1241888--1241924
15
2.5
15
100
0
74
16
29
18
35
1.93
1252227--1252256
14
2.1
15
93
6
53
40
26
0
33
1.57
1259878--1259913
9
4.0
9
89
10
56
77
0
19
2
0.88
1269201--1269374
52
3.5
51
82
8
214
28
14
21
35
1.93
1276277--1276403
62
2.0
62
92
0
209
25
14
22
36
1.93
1280335--1280376
22
2.0
21
85
4
57
30
28
14
26
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1280516--1280564
22
2.2
22
78
7
55
28
8
6
57
1.52
1280725--1280906
91
2.0
91
98
0
355
40
13
10
35
1.79
1281844--1281902
19
3.0
19
82
5
64
28
8
16
45
1.77
1281845--1281916
19
3.6
19
79
5
63
30
6
12
50
1.66
1290401--1290456
28
2.0
28
96
0
103
19
25
12
42
1.86
1292065--1292278
120
1.8
117
83
5
286
23
34
14
27
1.94
1298289--1298328
19
2.1
19
90
0
62
50
12
12
25
1.75
1306090--1306161
22
3.4
20
74
12
56
26
0
5
68
1.12
1306103--1306164
14
4.0
17
72
23
64
27
0
6
66
1.16
1306499--1306525
3
9.0
3
100
0
54
66
0
0
33
0.92
1312978--1313087
36
3.3
36
84
13
155
33
12
29
24
1.92
1315060--1315085
2
13.0
2
100
0
52
50
50
0
0
1.00

Tables:   1   2   3   4

The End!