genome.fa.s15354.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015354.1 Kokia drynarioides strain JFW-HI SEQ_130401, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1324750

Tables:   1   2   3   4   

This is table  1  of  4  ( 371 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20395--20444	15	3.5	15	70	10	50	24	16	10	50	1.75
23912--23961	14	3.3	15	71	18	50	26	2	4	68	1.18
24220--24259	18	2.2	18	95	0	71	30	7	5	57	1.48
24742--24805	32	2.0	32	93	0	110	39	10	3	46	1.55
25002--25082	29	2.9	29	83	10	98	34	0	3	61	1.14
31053--31097	19	2.4	19	81	7	56	37	0	4	57	1.19
31887--31916	16	1.9	16	93	6	53	16	13	0	70	1.18
31882--31926	22	2.0	22	87	8	65	17	13	0	68	1.20
31896--31942	22	2.2	22	88	3	69	14	6	4	74	1.17
32197--32251	19	2.9	19	89	10	78	56	5	0	38	1.23
35560--35589	2	15.0	2	100	0	60	50	0	0	50	1.00
35821--35894	15	4.7	15	72	20	53	28	0	2	68	1.03
36232--36346	60	1.9	61	83	7	153	47	13	9	29	1.74
51835--51877	16	2.6	17	85	10	63	58	0	0	41	0.98
51835--51876	8	5.2	8	77	11	50	59	0	0	40	0.97
51907--52039	66	2.0	66	100	0	266	42	7	7	42	1.61
52631--52677	23	2.1	21	81	14	51	46	8	2	42	1.46
55521--55553	7	4.7	7	96	0	57	33	0	39	27	1.57
56449--56507	29	2.1	28	90	9	93	35	3	13	47	1.60
58158--58248	45	2.0	45	100	0	182	52	15	10	20	1.72
59284--59317	16	2.1	16	89	10	52	32	5	0	61	1.20
59363--59406	23	1.9	23	85	0	61	40	9	0	50	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59267--59432	88	1.9	88	81	6	203	36	6	6	51	1.51
60263--60309	16	3.0	16	76	14	53	46	0	0	53	1.00
61177--61214	2	19.0	2	100	0	76	50	0	0	50	1.00
63816--63854	6	6.3	6	96	3	69	30	53	0	15	1.42
74924--75011	44	2.0	43	88	2	131	9	7	17	65	1.44
74941--75030	12	7.8	12	71	9	53	8	5	17	67	1.37
74925--75031	56	1.9	55	84	5	144	9	6	17	66	1.41
74941--75031	44	2.1	44	87	4	130	8	5	17	68	1.36
74947--75044	44	2.2	44	83	3	117	12	4	16	67	1.37
76758--76837	35	2.3	35	95	4	144	37	10	2	50	1.50
76779--76840	19	3.4	19	70	20	69	38	11	3	46	1.56
79423--79469	16	2.9	16	72	15	51	68	0	0	31	0.90
84031--84064	17	1.9	18	88	5	52	61	8	0	29	1.26
90650--90683	18	1.9	17	88	5	50	50	20	2	26	1.63
97553--97595	22	2.0	22	85	0	59	72	0	2	25	0.97
102955--103155	30	6.8	30	76	7	151	42	6	18	31	1.76
102966--103155	60	3.2	59	81	6	213	42	6	18	32	1.75
104947--105385	42	10.6	42	85	7	562	25	16	27	30	1.97
104947--105385	81	5.3	81	88	3	585	25	16	27	30	1.97
104947--105385	123	3.6	122	86	7	536	25	16	27	30	1.97
105723--106427	50	14.2	51	73	7	443	18	30	15	35	1.92
105762--106442	99	6.9	99	77	5	500	17	30	15	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105617--106442	149	5.6	149	76	6	471	18	30	15	35	1.92
105758--106439	248	2.7	247	79	3	760	17	30	15	35	1.92
106803--107014	112	1.9	115	85	4	297	36	11	21	30	1.88
107332--107379	17	2.8	17	81	9	62	2	18	0	79	0.84
107803--107973	81	2.1	81	92	1	290	28	16	16	38	1.91
112712--112951	30	8.0	30	77	4	225	40	3	20	36	1.69
112720--112971	90	2.8	89	80	8	278	39	3	20	36	1.69
112819--112986	60	2.8	59	76	8	169	39	4	22	33	1.73
113084--113147	33	2.0	33	84	3	85	60	9	14	15	1.57
126554--126593	2	20.0	2	100	0	80	50	50	0	0	1.00
127831--127893	23	2.7	23	78	9	74	28	15	23	31	1.96
127887--127928	22	1.9	22	85	0	57	19	14	38	28	1.90
128773--129096	173	1.9	173	94	0	576	33	11	20	33	1.89
132527--132557	2	15.5	2	100	0	62	48	0	0	51	1.00
135747--136075	41	8.1	41	82	1	383	31	20	29	17	1.96
136173--136211	19	2.1	19	85	0	51	28	20	28	23	1.99
136219--136275	24	2.4	24	88	5	80	29	19	31	19	1.96
136243--136399	41	3.8	41	85	0	206	31	21	32	15	1.94
136194--136321	65	2.0	65	87	3	186	31	19	32	17	1.95
136243--136423	41	4.4	40	83	1	173	32	22	30	14	1.94
136243--136423	82	2.2	82	82	0	209	32	22	30	14	1.94
136759--136797	21	1.9	20	89	5	60	69	7	7	15	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140528--140590	19	3.3	18	75	18	56	69	4	0	25	1.07
142192--142462	43	6.3	43	85	0	344	27	17	25	29	1.98
155267--155301	18	1.9	18	88	0	52	68	25	0	5	1.11
169601--169640	22	1.9	20	90	10	62	32	17	2	47	1.61
176114--176170	23	2.4	23	80	13	80	47	14	1	36	1.54
177830--177888	23	2.6	23	88	0	91	32	13	23	30	1.93
177881--177927	22	2.1	23	92	4	78	10	10	46	31	1.73
187092--187135	20	2.2	20	88	8	63	13	13	2	70	1.26
187100--187136	14	2.7	14	88	12	51	13	13	2	70	1.28
187592--187645	26	2.1	26	100	0	108	33	14	11	40	1.82
190104--190149	10	4.3	11	86	8	60	78	0	21	0	0.76
203767--203810	21	2.0	22	86	4	63	50	9	18	22	1.75
205244--205303	24	2.5	24	97	0	111	30	13	8	48	1.71
210525--210590	34	1.9	34	93	0	114	25	16	18	39	1.91
216259--216316	17	3.4	17	75	0	53	20	17	13	48	1.81
216251--216316	34	1.9	34	82	11	82	21	18	13	46	1.83
220165--220211	22	2.2	22	85	11	62	21	0	17	61	1.34
225243--225294	16	3.2	16	86	5	61	75	1	3	19	1.06
232585--232620	19	1.9	19	88	5	56	27	13	27	30	1.94
233311--233384	21	3.6	21	70	17	57	32	12	27	28	1.92
239553--239658	10	10.3	10	78	8	79	48	8	1	41	1.44
239553--239658	4	27.2	4	80	3	83	48	8	1	41	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
240219--240275	17	3.4	17	75	4	62	54	10	17	17	1.70
252013--252067	21	2.6	21	82	0	65	27	12	21	38	1.90
256264--256314	15	3.3	16	78	13	54	1	19	1	76	0.98
266160--266416	41	6.2	41	84	2	293	38	10	24	26	1.87
266160--266385	123	1.8	124	90	1	355	38	10	24	26	1.88
266477--266509	16	2.1	16	100	0	66	30	24	18	27	1.98
273988--274021	17	2.0	17	100	0	68	47	0	5	47	1.26
274598--274648	17	3.0	17	79	0	57	50	11	15	21	1.76
275047--275114	3	24.3	3	72	24	60	0	35	0	64	0.94
275068--275114	5	8.8	5	80	19	51	0	38	0	61	0.96
275047--275110	22	2.8	25	73	20	59	0	34	0	65	0.93
275047--275114	15	4.4	16	77	22	67	0	35	0	64	0.94
286332--286390	21	2.8	20	80	10	64	28	13	23	33	1.93
287850--287988	49	2.8	49	87	1	188	51	9	12	25	1.70
292044--292070	8	3.4	8	100	0	54	0	37	0	62	0.95
292850--292948	26	3.9	26	71	9	87	46	16	19	18	1.84
292761--292919	50	3.2	50	83	6	180	40	13	23	22	1.89
294032--294056	11	2.3	11	100	0	50	52	0	8	40	1.31
296274--296329	20	2.8	20	81	10	71	62	1	0	35	1.06
296283--296340	19	3.1	19	80	12	66	56	3	0	39	1.16
296566--296612	23	2.0	23	84	8	60	34	6	2	57	1.36
298932--298985	24	2.2	24	86	0	81	55	3	1	38	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305141--305185	17	2.6	17	85	3	54	46	13	20	20	1.83
311691--311725	18	1.9	18	88	0	52	25	17	20	37	1.94
313349--313395	23	2.0	23	83	4	58	51	10	12	25	1.72
318216--318312	49	2.0	49	97	0	185	23	25	26	23	2.00
318223--318325	49	2.1	49	89	3	154	24	22	28	25	1.99
333867--333955	43	2.1	43	97	0	169	20	29	14	35	1.92
342451--342494	16	2.8	15	83	10	52	65	2	4	27	1.23
342428--342488	25	2.4	25	86	10	88	62	3	1	32	1.21
352387--352446	21	2.9	21	74	0	57	35	13	20	31	1.91
357038--357100	13	4.8	13	74	18	60	3	17	0	79	0.86

Tables:   1   2   3   4