genome.fa.s15354.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015354.1 Kokia drynarioides strain JFW-HI SEQ_130401, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1324750

Tables:   1   2   3   4   

This is table  3  of  4  ( 371 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
786948--786996	22	2.2	23	78	10	57	42	6	6	44	1.54
788273--788324	25	2.1	24	82	3	59	15	11	17	55	1.68
788425--788452	6	4.7	6	100	0	56	14	0	32	53	1.41
790481--790555	24	3.1	24	92	3	116	25	8	6	60	1.50
799164--799202	18	2.2	18	85	0	51	35	0	7	56	1.28
811391--811422	15	2.1	16	88	11	50	78	3	6	12	1.06
812732--812756	6	4.2	6	100	0	50	84	0	16	0	0.63
821474--821508	16	2.2	16	89	0	52	74	2	22	0	0.95
823180--823241	21	3.0	21	65	9	54	32	14	24	29	1.94
823158--823241	42	2.0	42	95	0	150	32	17	25	25	1.97
836452--836498	18	2.6	18	96	0	85	42	19	12	25	1.86
836557--836581	6	4.2	6	100	0	50	52	32	16	0	1.44
859051--859102	18	2.9	18	82	0	68	38	23	13	25	1.91
872485--872583	30	3.4	28	73	8	81	32	21	7	39	1.80
872467--872630	59	2.8	59	83	2	168	34	21	6	37	1.79
872501--872597	29	3.3	29	73	8	97	35	22	7	35	1.82
872506--872630	59	2.1	59	88	2	180	36	23	7	33	1.82
874030--874062	14	2.2	16	89	10	52	12	12	6	69	1.35
875766--875796	2	15.5	2	100	0	62	0	0	48	51	1.00
882851--882886	18	2.0	19	89	10	58	22	2	2	72	1.11
885712--886139	215	2.0	215	97	0	811	42	14	23	19	1.89
890593--890640	21	2.3	21	85	7	62	60	2	33	4	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
901809--902063	123	2.1	123	86	2	352	21	19	18	40	1.92
902099--902259	78	2.1	76	86	4	216	23	20	15	40	1.91
902273--902428	85	1.8	85	85	0	222	30	18	13	37	1.89
901921--902493	285	2.0	287	87	0	835	24	19	16	39	1.92
902353--902596	124	2.0	124	88	0	362	23	19	16	40	1.91
902626--902862	45	5.2	46	80	7	175	24	16	24	33	1.96
902655--902862	45	4.6	46	82	7	241	25	15	25	33	1.95
903179--903430	49	5.2	49	73	8	174	22	25	13	38	1.91
904312--904348	17	2.2	17	86	13	51	2	18	0	78	0.87
905189--905232	19	2.4	19	85	11	56	0	27	2	70	0.99
909155--909179	13	1.9	13	100	0	50	72	0	0	28	0.86
913148--913227	39	2.1	39	100	0	160	50	15	10	25	1.74
917492--917524	15	2.2	15	100	0	66	0	45	9	45	1.35
917742--917789	18	2.7	18	76	0	51	22	8	31	37	1.84
922512--922610	36	2.8	36	90	3	137	24	26	16	33	1.96
923314--923342	10	2.9	10	100	0	58	58	10	0	31	1.31
927943--928041	36	2.8	36	90	0	153	22	25	17	35	1.95
932149--932198	21	2.4	22	71	18	52	40	22	16	22	1.91
932802--932893	36	2.6	36	76	0	103	25	29	15	30	1.95
936621--936702	41	2.0	41	100	0	164	19	21	12	46	1.82
940654--940700	18	2.7	18	87	6	62	59	8	12	19	1.58
948715--948747	15	2.3	15	89	5	50	75	6	9	9	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
950680--950715	14	2.6	13	91	8	54	72	2	8	16	1.21
967102--967183	30	2.9	28	76	5	92	62	1	4	31	1.24
967076--967257	9	18.9	9	66	14	71	60	1	6	30	1.31
967169--967207	13	3.1	13	85	3	53	69	2	7	20	1.26
967192--967257	28	2.3	29	80	12	75	57	0	9	33	1.30
968282--968582	153	2.0	153	93	1	514	36	5	24	33	1.80
969916--969969	21	2.6	21	82	5	65	25	14	27	31	1.95
973506--973554	23	2.1	23	100	0	98	12	26	4	57	1.53
987459--987510	24	2.1	25	82	3	61	71	0	9	19	1.13
996153--996227	36	2.1	36	95	5	134	2	33	10	53	1.50
996204--996254	3	16.3	3	88	8	75	0	29	0	70	0.87
1008751--1008789	20	2.0	20	84	0	51	38	0	28	33	1.57
1015387--1015417	16	1.9	16	93	0	53	22	16	0	61	1.34
1020795--1020863	20	3.5	20	73	15	61	36	8	13	42	1.75
1022010--1022054	18	2.5	19	89	7	67	0	37	0	62	0.96
1038741--1038785	19	2.6	16	83	13	54	77	2	17	2	0.97
1044183--1044226	21	2.1	21	86	0	61	11	15	4	68	1.36
1046905--1046943	13	3.1	12	88	7	51	12	12	0	74	1.08
1046897--1046934	20	1.9	20	84	10	51	10	10	0	78	0.95
1048006--1048045	19	2.1	19	95	0	71	45	12	20	22	1.84
1051938--1051973	16	2.2	16	95	0	63	58	13	5	22	1.56
1066572--1066625	24	2.2	25	77	12	58	59	1	0	38	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1085183--1085229	22	2.1	22	100	0	94	38	17	10	34	1.84
1121331--1121382	22	2.4	21	75	9	52	75	1	21	1	1.00
1126328--1126439	56	2.0	56	100	0	224	33	16	17	32	1.92
1127549--1127588	18	2.0	20	86	13	57	45	12	12	30	1.79
1138463--1138500	19	2.0	19	89	0	58	68	13	5	13	1.37
1142575--1142599	3	8.3	3	100	0	50	0	0	32	68	0.90
1147814--1147938	59	2.1	59	96	0	232	36	24	4	35	1.74
1149649--1149721	28	2.6	28	95	0	128	26	27	17	28	1.98
1158065--1158131	26	2.6	25	81	9	64	58	7	5	28	1.49
1158418--1158453	19	1.9	19	88	5	56	33	0	22	44	1.53
1159200--1159226	14	1.9	14	100	0	54	14	33	14	37	1.88
1164100--1164132	12	2.6	13	95	4	59	72	12	0	15	1.12
1179058--1179087	15	1.9	16	93	6	53	50	20	3	26	1.64
1189869--1189912	21	2.1	21	82	0	52	47	15	11	25	1.79
1196467--1196517	17	3.0	17	91	0	84	19	19	9	50	1.75
1198011--1198059	22	2.2	22	100	0	98	38	12	34	14	1.83
1205284--1205322	20	2.0	20	85	10	53	38	2	2	56	1.27
1206687--1206898	36	5.9	36	86	0	307	28	9	24	37	1.86
1207161--1207285	66	1.9	66	85	6	173	19	13	23	44	1.86
1207374--1207480	23	4.8	22	82	10	128	33	3	14	47	1.63
1207369--1207493	45	2.8	46	81	14	154	33	4	16	46	1.65
1207504--1207533	10	3.0	10	90	0	51	46	0	13	40	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1212477--1212514	15	2.6	15	87	4	51	71	5	10	13	1.30
1234997--1235036	21	1.9	21	89	0	62	75	0	25	0	0.81
1235230--1235309	42	1.9	42	92	0	133	36	18	17	27	1.94
1239517--1239591	37	2.0	37	86	0	105	28	16	29	26	1.96
1240609--1240657	17	2.9	17	81	0	53	46	6	20	26	1.73
1241337--1241361	12	2.1	12	100	0	50	8	28	0	64	1.22
1243721--1243774	26	2.1	26	85	0	72	31	25	16	25	1.97
1243877--1243953	37	2.1	37	87	0	109	23	19	31	25	1.98
1248064--1248101	15	2.6	15	91	4	60	76	2	13	7	1.11
1248057--1248131	29	2.7	27	75	15	80	77	1	12	9	1.06
1253035--1254865	210	8.8	210	88	2	2434	36	18	22	22	1.95
1253020--1254865	419	4.4	419	88	2	2539	36	18	22	22	1.95
1255257--1255340	34	2.5	34	90	1	125	38	2	3	55	1.30
1255257--1255332	17	4.5	17	81	3	100	35	1	3	59	1.24
1256063--1256089	3	9.0	3	100	0	54	66	0	0	33	0.92
1257210--1257464	59	4.4	56	82	8	226	35	26	2	35	1.71
1257215--1257498	58	4.9	59	82	6	269	35	25	2	35	1.71
1257240--1257500	29	9.0	29	76	11	166	35	25	2	36	1.70
1262154--1262341	95	2.0	95	90	0	295	43	6	15	35	1.72
1263068--1263138	32	2.2	32	85	7	99	25	35	18	21	1.95
1264553--1264883	164	2.0	163	94	2	576	34	7	6	51	1.57
1265477--1265707	89	2.7	89	80	7	226	35	16	9	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1265821--1265921	8	11.2	8	73	15	58	67	0	2	28	1.12
1265821--1266002	9	19.7	9	67	22	76	64	2	4	29	1.25
1265824--1265921	19	5.4	19	77	9	73	67	1	3	28	1.12
1265838--1266002	47	3.5	45	75	13	118	63	2	4	29	1.28
1265833--1266002	10	17.9	10	66	21	82	64	2	4	28	1.26
1266022--1266054	11	3.1	11	86	4	50	33	3	0	63	1.10
1266172--1266220	18	2.7	18	78	9	55	32	4	0	63	1.13
1268174--1268427	84	3.0	84	98	0	483	31	31	9	27	1.88
1285165--1285202	17	2.2	18	85	4	51	68	7	23	0	1.16
1285302--1285340	17	2.4	16	82	4	51	15	10	15	58	1.62

Tables:   1   2   3   4