genome.fa.s15354.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015354.1 Kokia drynarioides strain JFW-HI SEQ_130401, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1324750

Tables:   1   2   3   4   

This is table  2  of  4  ( 371 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357035--357100	26	2.5	27	80	14	84	4	18	0	77	0.94
357052--357100	24	2.0	24	84	7	64	4	18	0	77	0.92
358076--358122	18	2.6	18	86	0	67	23	19	38	19	1.93
378359--378387	13	2.3	13	94	5	51	62	0	0	37	0.96
399021--399093	20	3.7	20	70	15	62	31	2	19	46	1.64
399067--399106	20	1.9	19	85	14	53	32	5	22	40	1.76
399196--399238	20	2.1	21	91	4	70	23	0	18	58	1.40
399457--399491	16	2.1	17	89	5	54	40	0	0	60	0.97
402939--402980	2	21.0	2	90	0	66	47	47	2	2	1.28
411419--411464	6	8.0	6	79	16	53	45	0	0	54	0.99
411417--411449	16	2.0	17	94	5	59	42	0	0	57	0.98
411419--411464	23	2.0	23	87	8	67	45	0	0	54	0.99
411419--411464	17	2.7	17	83	12	51	45	0	0	54	0.99
411426--411464	11	3.5	11	86	10	53	46	0	0	53	1.00
412066--412099	13	2.7	13	90	4	52	55	0	2	41	1.15
412978--413043	30	2.2	30	83	5	80	40	22	1	34	1.63
412988--413139	30	5.2	30	77	9	118	34	25	1	38	1.67
413008--413166	86	1.8	86	84	6	214	37	25	2	34	1.70
412977--413253	29	9.5	30	75	11	168	36	25	3	34	1.74
413059--413196	30	4.8	28	80	11	136	36	26	3	33	1.74
412974--413263	116	2.5	116	76	9	261	36	25	3	34	1.73
413231--413325	30	3.2	29	82	8	95	41	21	2	35	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
425634--425972	39	8.7	39	72	1	205	25	31	18	23	1.97
425634--425981	155	2.2	156	86	2	468	26	31	18	23	1.97
425634--425986	77	4.5	77	79	1	346	26	32	17	23	1.97
426430--426496	16	4.1	16	78	5	71	40	4	2	52	1.37
426451--426494	17	2.7	16	79	6	52	43	6	2	47	1.42
428089--428286	29	6.8	29	78	9	136	35	27	3	34	1.72
428089--428315	58	3.9	58	76	8	201	35	27	3	33	1.73
428186--428373	87	2.2	87	82	7	222	37	26	3	32	1.74
428116--428373	29	8.8	29	77	9	168	35	27	3	33	1.74
428381--428438	30	2.0	29	89	3	89	37	18	3	39	1.68
432762--433008	116	2.1	116	89	3	383	26	9	25	37	1.87
439118--439165	15	3.2	15	85	5	53	29	27	8	35	1.86
442451--442525	33	2.3	33	90	0	123	20	29	5	45	1.73
444136--444185	21	2.7	17	77	19	55	72	4	4	20	1.18
445644--445683	20	2.0	21	85	5	55	72	5	0	22	1.04
450343--450471	47	2.8	47	82	7	147	44	24	10	20	1.83
453600--453640	2	20.5	2	89	0	64	46	2	2	48	1.28
454326--454383	26	2.2	26	100	0	116	62	8	10	18	1.53
454736--454782	12	3.9	12	77	5	51	0	27	2	70	0.99
455277--455311	18	1.9	18	88	0	52	5	37	2	54	1.39
457879--458053	48	3.7	48	88	0	253	25	8	12	54	1.65
458734--458772	20	2.0	20	85	10	53	71	5	0	23	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460238--460296	3	19.7	3	100	0	118	67	0	0	32	0.91
460241--460310	15	4.7	15	92	5	58	70	1	0	28	0.96
461402--461429	14	2.0	14	100	0	56	21	21	28	28	1.99
464647--464737	18	4.9	19	72	11	91	30	9	1	58	1.38
464647--464746	36	2.7	37	89	1	157	31	10	2	57	1.43
464742--465153	205	2.0	205	98	0	788	34	19	10	35	1.87
467135--467201	28	2.4	28	82	5	82	41	28	11	17	1.85
476661--476699	20	1.9	21	89	5	62	58	5	2	33	1.33
477000--477045	15	3.1	15	70	17	51	26	8	10	54	1.64
477258--477286	6	4.8	6	100	0	58	13	34	0	51	1.42
477291--477521	113	2.1	113	89	2	349	32	16	7	44	1.75
490691--490741	24	2.1	26	82	10	63	7	9	27	54	1.60
492576--492618	18	2.4	18	100	0	86	20	16	55	6	1.64
496296--496330	11	3.1	11	91	4	52	48	2	0	48	1.16
496923--496992	26	2.5	27	80	13	79	44	2	0	52	1.15
496933--496990	29	2.0	30	86	10	84	46	3	0	50	1.18
502058--502082	13	1.9	13	100	0	50	52	0	0	48	1.00
513180--513220	21	2.0	21	85	0	55	21	14	26	36	1.93
515295--515365	35	2.0	35	100	0	142	32	8	25	33	1.86
520860--520917	29	2.0	29	96	0	107	27	6	15	50	1.70
523619--523648	15	2.0	15	100	0	60	33	0	20	46	1.51
537658--537691	9	3.8	9	85	14	52	0	20	0	79	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545681--545709	12	2.5	12	94	5	51	6	0	37	55	1.27
548920--548955	12	3.0	12	83	0	54	72	5	5	16	1.23
549354--549423	35	2.0	35	100	0	140	34	17	5	42	1.73
576197--576285	40	2.2	40	97	0	169	47	7	6	38	1.59
593305--593464	75	2.1	74	83	3	196	43	6	13	37	1.69
597561--598155	83	7.5	75	82	9	538	39	6	16	37	1.73
597739--598174	83	5.2	83	85	5	594	41	5	15	37	1.71
597664--598174	167	3.1	166	85	7	645	41	5	15	37	1.71
597664--598171	250	2.1	242	85	5	691	41	5	15	37	1.71
598873--598914	22	1.9	22	85	9	59	52	2	2	42	1.27
599810--599856	22	2.1	22	100	0	94	25	17	10	46	1.79
601947--601989	19	2.4	18	85	14	54	37	2	2	58	1.24
608136--608616	158	3.0	158	89	1	705	23	23	22	30	1.99
622624--623017	139	2.8	139	90	1	596	26	24	22	26	2.00
623435--623466	16	2.1	15	94	5	55	53	12	0	34	1.39
627997--628141	74	1.9	77	90	4	233	34	23	15	26	1.94
630745--631105	195	1.8	198	83	2	478	31	17	23	27	1.97
631897--631929	7	4.7	7	88	11	50	33	0	12	54	1.37
639493--639581	45	2.0	45	90	0	142	31	24	12	31	1.92
644345--644377	15	2.2	15	89	10	50	15	9	6	69	1.34
649663--649739	21	3.7	21	75	10	68	25	11	27	35	1.91
670722--670772	17	3.1	16	80	2	57	74	1	11	11	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
682088--682204	43	2.7	44	75	11	114	41	20	7	30	1.80
682100--682204	44	2.4	45	75	15	112	40	20	7	31	1.80
682241--682331	29	3.1	29	100	0	182	38	17	9	34	1.83
682191--682329	58	2.4	58	85	0	170	40	20	10	28	1.85
682241--682355	58	2.0	58	87	3	169	38	18	9	33	1.83
682756--682836	40	2.0	40	97	0	153	29	20	19	29	1.97
682976--683006	15	2.1	15	100	0	62	41	25	12	19	1.87
688880--688913	13	2.6	13	95	0	59	73	11	0	14	1.10
688880--688913	7	5.1	7	86	13	54	73	11	0	14	1.10
693868--693932	3	22.3	3	76	17	57	64	1	32	1	1.12
707882--707920	20	2.0	20	85	10	53	66	7	12	12	1.43
717156--717214	27	2.2	27	96	0	109	28	11	22	37	1.89
719848--719899	14	3.8	13	78	12	52	44	0	0	55	0.99
744430--744477	21	2.3	21	100	0	96	22	27	27	22	1.99
748231--748286	10	5.6	10	74	16	53	5	19	0	75	1.00
748626--748671	24	1.9	24	86	8	67	43	15	8	32	1.77
748861--748913	17	3.1	16	82	15	54	66	9	5	18	1.41
750539--750592	23	2.3	23	100	0	108	31	24	12	31	1.93
751162--751191	14	2.1	14	93	0	51	73	3	10	13	1.21
765647--765682	15	2.5	15	86	4	56	13	13	5	66	1.41
767523--767557	3	11.3	3	87	6	52	68	0	28	2	1.04
768003--768046	19	2.3	19	92	0	70	15	9	13	61	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
768635--768676	18	2.3	18	80	8	50	71	0	21	7	1.09
772264--772514	45	5.7	43	74	8	175	39	14	18	27	1.90
772263--772560	45	6.7	43	73	11	174	37	14	19	28	1.91
772263--772560	88	3.4	86	80	10	282	37	14	19	28	1.91
775001--775061	17	3.5	17	80	6	61	47	13	18	21	1.82
775509--775579	12	5.8	12	75	8	63	2	39	1	56	1.23
775509--775586	24	3.2	24	83	0	84	3	38	1	56	1.26
777913--778261	173	2.0	173	98	0	680	21	18	22	37	1.94
784570--784615	25	1.9	25	86	8	69	32	4	6	56	1.45
786569--786654	32	2.6	33	78	10	95	32	10	10	46	1.72

Tables:   1   2   3   4