genome.fa.s100.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold100
Parameters: 2 7 7 80 10 50 1000
Length:  904619

Tables:   1   2   3   4   5   6   7   8   

This is table  5  of  8  ( 870 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
575913--576029	51	2.3	51	84	0	144	31	14	25	28	1.95
575838--576108	130	2.1	130	83	4	334	32	14	25	26	1.95
575964--576292	79	4.2	79	81	2	360	31	14	25	27	1.95
576251--576321	28	2.5	29	86	6	101	25	21	29	23	1.99
576190--576394	106	1.9	106	88	3	306	31	14	28	25	1.95
576279--576431	78	1.9	79	82	1	191	31	13	27	28	1.94
579631--579675	1	45.0	1	93	0	63	93	0	2	4	0.41
579637--579677	21	2.0	21	100	0	82	87	0	2	9	0.62
579680--579736	21	2.7	21	97	0	105	33	10	19	36	1.86
579792--579859	19	3.9	19	78	21	85	35	11	14	38	1.83
579813--579837	13	1.9	13	100	0	50	36	16	16	32	1.90
579794--579856	32	2.0	32	96	0	117	34	12	15	36	1.86
579899--579924	13	2.0	13	100	0	52	30	15	15	38	1.88
579879--579945	33	2.0	33	88	0	98	25	14	16	43	1.86
582411--582580	52	3.3	52	79	9	170	30	24	12	33	1.92
582564--582640	28	2.8	28	87	0	100	23	33	19	23	1.97
582594--582795	76	2.6	78	79	5	214	25	30	16	28	1.97
595194--595248	14	3.9	14	90	7	76	85	9	5	0	0.74
596277--596366	26	3.3	26	68	14	83	28	32	17	21	1.96
596230--597072	55	15.3	55	92	4	1273	28	30	20	20	1.98
597668--597718	1	51.0	1	94	0	75	94	0	1	3	0.38
597678--597720	22	2.0	22	100	0	86	88	0	2	9	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
597723--597779	21	2.7	21	97	0	105	33	10	19	36	1.86
597835--597902	19	3.9	19	78	21	85	35	11	14	38	1.83
597856--597880	13	1.9	13	100	0	50	36	16	16	32	1.90
597837--597899	32	2.0	32	96	0	117	34	12	15	36	1.86
597942--597967	13	2.0	13	100	0	52	30	15	15	38	1.88
597922--597988	33	2.0	33	88	0	98	25	14	16	43	1.86
600454--600622	52	3.2	52	78	9	168	29	23	13	34	1.92
600607--600683	28	2.8	28	87	0	100	23	33	19	23	1.97
600637--600838	76	2.6	78	79	5	214	25	30	16	28	1.97
604065--604193	52	2.5	52	94	2	224	31	17	17	33	1.93
604065--604213	52	2.9	50	88	7	201	32	17	17	32	1.93
604202--604226	13	1.9	13	100	0	50	36	16	16	32	1.90
604246--604312	33	2.0	33	85	0	89	38	14	11	34	1.84
605133--605823	49	14.8	47	82	11	811	31	18	24	25	1.97
605185--605823	92	7.0	92	94	2	1024	31	18	24	25	1.98
605862--605952	35	2.7	34	76	6	87	36	13	28	21	1.91
605930--606343	30	13.9	30	77	11	302	26	16	30	26	1.97
605930--606342	57	6.9	58	73	12	200	26	16	30	26	1.97
605937--606106	85	2.0	86	87	3	245	22	17	32	27	1.96
605838--606314	213	2.2	213	93	2	807	27	16	29	26	1.97
606143--606347	57	3.6	56	80	8	207	24	16	30	28	1.96
607350--608162	53	15.3	55	84	9	977	28	30	20	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
607350--608138	105	7.4	105	84	10	933	28	30	20	19	1.97
608757--608803	1	47.0	1	93	0	67	93	0	2	4	0.40
608757--608805	19	2.8	18	90	9	75	89	0	2	8	0.55
608808--608882	21	3.7	21	85	5	100	34	14	17	33	1.90
608917--608983	19	3.9	19	76	23	76	35	10	14	38	1.81
608938--608962	13	1.9	13	100	0	50	36	16	16	32	1.90
608919--608980	32	2.0	31	93	3	106	35	11	16	37	1.84
611447--611512	25	2.6	26	87	4	98	24	31	21	22	1.98
611658--611728	29	2.5	29	86	2	90	23	33	18	23	1.96
611606--611808	107	1.9	106	82	8	250	27	27	14	30	1.95
611844--611898	27	2.0	26	83	13	67	30	36	9	23	1.86
617305--617360	15	3.8	15	88	6	71	85	8	5	0	0.73
617309--617360	1	52.0	1	78	0	50	88	7	3	0	0.62
618389--618478	26	3.3	26	68	14	83	28	32	17	21	1.96
618342--619184	55	15.3	55	92	4	1273	28	30	20	20	1.98
619780--619828	1	49.0	1	93	0	71	93	0	2	4	0.39
619790--619830	21	2.0	21	100	0	82	87	0	2	9	0.62
619833--619889	21	2.7	21	97	0	105	33	10	19	36	1.86
619945--620012	19	3.9	19	78	21	85	35	11	14	38	1.83
619966--619990	13	1.9	13	100	0	50	36	16	16	32	1.90
619947--620009	32	2.0	32	96	0	117	34	12	15	36	1.86
620052--620077	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
620032--620098	33	2.0	33	88	0	98	25	14	16	43	1.86
622562--622730	52	3.2	52	78	9	168	29	23	13	34	1.92
622715--622791	28	2.8	28	87	0	100	23	33	19	23	1.97
622745--622946	76	2.6	78	79	5	214	25	30	16	28	1.97
626174--626302	52	2.5	52	94	2	224	31	17	17	33	1.93
626174--626322	52	2.9	50	88	7	201	32	17	17	32	1.93
626311--626335	13	1.9	13	100	0	50	36	16	16	32	1.90
626355--626421	33	2.0	33	85	0	89	38	14	11	34	1.84
627187--627924	49	15.6	52	78	13	404	32	18	24	24	1.97
627240--627932	141	4.9	138	84	10	881	32	18	24	24	1.97
627294--627932	92	7.0	92	94	2	1031	31	18	24	25	1.98
627971--628062	35	2.7	35	77	5	98	36	13	28	21	1.91
628040--628456	30	13.9	30	77	10	320	26	16	30	26	1.97
628040--628456	56	7.0	59	74	11	285	26	16	30	26	1.97
627947--628426	214	2.2	214	94	1	836	27	16	29	26	1.97
629904--629977	1	74.0	1	75	0	67	0	0	12	87	0.53
629892--629977	45	1.9	44	88	6	129	0	0	13	86	0.58
629898--629978	33	2.5	34	88	6	123	0	0	14	85	0.61
642949--643077	52	2.5	52	94	2	224	31	17	17	33	1.93
642949--643097	52	2.9	50	88	7	201	32	17	17	32	1.93
643086--643110	13	1.9	13	100	0	50	36	16	16	32	1.90
643151--643217	33	2.0	33	88	0	98	40	14	11	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
643173--643197	13	1.9	13	100	0	50	32	16	16	36	1.90
643255--643310	21	2.7	21	100	0	112	35	17	10	35	1.85
643629--643672	20	2.2	20	95	0	79	47	13	15	22	1.81
648755--648885	52	2.5	52	93	0	226	30	16	19	33	1.94
648755--648905	52	2.9	51	87	3	212	31	16	19	32	1.94
648894--648918	13	1.9	13	100	0	50	36	16	16	32	1.90
648985--649009	13	1.9	13	100	0	50	32	16	16	36	1.90
649972--650467	43	11.0	43	79	11	532	31	18	25	23	1.98
650052--650119	21	3.2	21	63	19	50	29	17	26	26	1.98
650050--650467	92	4.5	92	93	1	703	32	18	24	23	1.97
649915--650467	184	3.0	184	91	4	847	32	18	24	24	1.97
650455--650726	27	9.3	28	74	12	199	22	16	31	28	1.96
650483--650726	29	8.3	29	76	9	174	23	16	31	29	1.96
652165--652271	1	107.0	1	77	0	97	0	1	10	87	0.61
652167--652270	9	11.9	9	82	11	119	0	1	10	87	0.62
652168--652271	25	4.2	24	83	15	131	0	1	10	87	0.62
652166--652269	37	3.0	34	81	15	131	0	1	10	87	0.62
652165--652271	35	3.2	34	82	5	146	0	1	10	87	0.61
666129--666277	52	2.9	51	86	4	217	31	16	18	33	1.93
666266--666290	13	1.9	13	100	0	50	36	16	16	32	1.90
666363--666387	13	1.9	13	100	0	50	32	16	16	36	1.90
667724--668069	117	2.9	117	86	0	431	30	16	16	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668943--669019	24	3.2	24	81	0	64	32	22	23	22	1.98
671902--671946	18	2.4	19	92	3	74	53	6	6	33	1.53
675187--675403	79	2.8	79	89	3	325	28	26	12	32	1.93
675261--675503	130	1.9	129	84	4	328	28	27	13	30	1.94
675392--675926	79	6.9	78	79	7	509	27	26	14	31	1.95
675392--675926	157	3.4	154	78	8	528	27	26	14	31	1.95
682129--683133	55	17.4	55	81	10	1020	26	28	20	24	1.99
682157--683133	172	5.6	171	82	8	1154	26	28	20	24	1.99
682413--682501	28	3.2	28	65	6	72	24	25	20	29	1.99
683996--684040	18	2.4	19	92	3	74	53	6	6	33	1.53

Tables:   1   2   3   4   5   6   7   8