genome.fa.s100.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold100
Parameters: 2 7 7 80 10 50 1000
Length:  904619

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 870 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
884743--884803	21	2.9	20	78	9	68	57	1	0	40	1.08
885024--885072	24	2.1	24	85	11	66	69	2	4	24	1.17
885022--885074	23	2.3	23	78	18	65	67	1	3	26	1.17
888096--888122	2	13.5	2	100	0	54	51	0	0	48	1.00
888587--888630	20	2.1	21	87	8	63	54	0	2	43	1.12
888618--888654	18	2.1	18	89	0	56	54	0	0	45	1.00
888704--888739	16	2.2	17	95	5	65	50	0	0	50	1.00
888899--888932	2	17.0	2	100	0	68	50	0	0	50	1.00
889113--889165	27	2.0	25	82	7	61	50	9	0	39	1.35
890287--890324	19	2.0	19	85	10	51	31	0	15	52	1.43
891334--891398	30	2.2	30	85	0	58	24	36	27	10	1.89
891334--891719	60	6.4	60	79	2	344	22	34	29	13	1.92
891445--891524	15	5.3	15	64	21	51	27	33	25	13	1.93
891444--891719	30	9.2	30	90	0	383	20	34	31	13	1.91
891490--891826	30	11.2	30	88	1	219	19	35	34	11	1.88
891490--891832	45	7.6	45	70	2	231	19	35	33	11	1.88
891610--891826	105	2.1	105	90	0	335	19	35	35	9	1.84
891716--891847	60	2.2	60	91	0	210	21	37	31	9	1.85
891716--891847	30	4.4	30	84	0	156	21	37	31	9	1.85
892161--892189	2	14.5	2	100	0	58	51	0	0	48	1.00
892620--892678	17	3.6	16	78	17	59	40	0	0	59	0.97
893124--893172	16	2.7	20	76	20	54	59	0	0	40	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
896980--897019	21	2.0	20	90	5	62	37	2	0	60	1.11
899098--899205	13	9.2	13	75	24	114	27	15	16	39	1.89
899108--899220	20	5.7	20	75	22	112	28	15	15	39	1.89
899070--899192	34	3.6	33	94	4	210	28	17	15	39	1.90
899128--899220	46	2.0	47	93	2	161	29	15	16	39	1.88
901595--901869	105	2.6	106	78	8	297	28	24	13	32	1.94
901748--901823	28	2.8	27	82	11	93	22	31	21	25	1.98
901857--902076	78	2.9	76	82	5	246	29	20	14	35	1.92

Tables:   1   2   3   4   5   6   7   8

The End!