genome.fa.s100.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold100
Parameters: 2 7 7 80 10 50 1000
Length:  904619

Tables:   1   2   3   4   5   6   7   8   

This is table  7  of  8  ( 870 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
785213--785309	27	3.5	27	71	10	88	36	15	28	19	1.93
787526--787567	21	2.0	21	95	0	75	23	0	26	50	1.50
787518--787585	12	5.8	12	71	11	52	19	1	29	50	1.57
791669--791699	2	16.0	2	93	6	55	51	0	0	48	1.00
792911--792937	2	13.5	2	100	0	54	51	0	0	48	1.00
794188--794213	2	13.0	2	100	0	52	50	0	0	50	1.00
795142--795210	30	2.4	30	88	7	99	60	4	0	34	1.16
795604--795638	18	2.0	17	88	5	52	40	2	0	57	1.14
796257--796298	2	21.0	2	95	0	75	47	0	0	52	1.00
796395--796432	15	2.5	15	86	0	58	60	0	0	39	0.97
796440--796490	23	2.2	23	82	6	59	64	1	1	31	1.15
796940--797004	22	3.0	22	77	6	69	60	0	0	40	0.97
801659--801697	2	19.5	2	100	0	78	51	0	0	48	1.00
811466--811623	84	1.9	84	85	2	219	37	21	10	30	1.88
812527--812558	6	4.9	7	92	7	50	46	0	0	53	1.00
812531--812565	6	5.8	6	90	10	54	45	0	0	54	0.99
812952--813006	20	2.7	21	91	5	87	40	0	0	60	0.97
812953--813014	20	3.0	21	86	6	83	41	0	0	58	0.98
813878--813909	17	1.9	16	93	6	55	40	3	0	56	1.15
815685--815777	47	2.0	48	93	2	161	30	4	3	62	1.30
819014--819047	9	3.7	9	84	7	50	55	0	0	44	0.99
819580--819634	22	2.6	22	80	5	69	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
819983--820026	19	2.2	20	88	11	65	59	2	0	38	1.10
821704--821741	19	2.0	19	89	0	58	42	0	0	57	0.98
822185--822239	21	2.5	21	80	13	58	18	3	5	72	1.18
822243--822314	23	3.2	23	76	9	76	27	0	19	52	1.46
824169--824276	53	2.0	53	98	0	207	45	4	18	31	1.70
824431--824473	23	1.9	22	85	4	59	51	0	0	48	1.00
826624--826651	2	14.0	2	100	0	56	50	0	0	50	1.00
826863--826894	15	2.1	16	94	5	57	56	0	0	43	0.99
827541--827635	19	4.8	19	70	20	70	41	2	0	56	1.11
827541--827628	21	4.4	20	75	18	62	40	2	0	56	1.11
827844--827895	21	2.4	22	77	3	61	42	0	0	57	0.98
828088--828221	47	2.8	48	76	15	111	60	0	0	38	1.02
828163--828225	31	2.1	30	85	8	83	63	0	0	36	0.95
828160--828225	17	4.2	16	70	16	57	63	0	0	36	0.95
828177--828234	30	1.9	31	82	10	75	65	1	0	32	1.03
828227--828264	19	2.0	19	100	0	76	52	10	10	26	1.68
828664--828702	13	2.9	13	85	7	51	66	0	0	33	0.92
828675--828724	22	2.2	23	85	3	75	64	0	2	34	1.05
829512--829574	26	2.5	26	82	7	67	61	1	0	36	1.05
829943--829993	26	2.0	26	85	11	70	62	7	1	27	1.33
830702--830732	6	5.2	6	100	0	62	32	0	0	67	0.91
830895--830938	20	2.3	19	80	7	52	38	2	2	56	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
831108--831166	29	2.0	30	90	3	93	49	0	0	50	1.00
831115--831182	29	2.4	29	82	7	86	50	0	1	48	1.10
831703--831730	14	2.0	14	100	0	56	35	0	0	64	0.94
831938--832104	83	2.0	85	90	4	268	40	2	4	52	1.35
831938--832120	82	2.2	83	85	8	230	40	2	4	51	1.36
832243--832282	18	2.2	19	86	4	55	35	0	0	65	0.93
832447--832515	31	2.3	31	92	2	113	43	7	5	43	1.56
833288--833327	3	13.3	3	100	0	80	65	0	35	0	0.93
833793--833833	19	2.2	19	91	8	66	43	0	0	56	0.99
834056--834110	14	3.8	14	72	23	51	54	1	0	43	1.10
834061--834107	16	3.0	16	74	25	55	51	2	0	46	1.13
834056--834110	22	2.5	22	78	21	62	54	1	0	43	1.10
835068--835113	18	2.5	17	83	13	56	58	0	2	39	1.10
835353--835418	24	2.8	23	82	15	66	65	1	3	30	1.17
835367--835423	17	3.3	17	83	11	71	68	0	1	29	1.00
835367--835438	35	2.1	35	84	10	94	68	0	1	30	0.99
835369--835442	18	3.9	18	78	16	71	67	0	1	31	0.99
835375--835438	9	7.6	8	74	22	60	68	0	1	29	0.99
835353--835418	23	2.8	24	82	11	75	65	1	3	30	1.17
835475--835522	21	2.3	21	82	7	62	62	0	0	37	0.95
835497--835545	8	5.6	9	77	20	50	67	2	2	28	1.13
835374--835545	17	9.8	17	68	17	59	61	1	1	35	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
836224--836261	2	19.0	2	100	0	76	50	0	0	50	1.00
836719--836770	28	1.9	26	84	7	68	53	1	0	44	1.11
837085--837113	2	14.5	2	100	0	58	51	0	0	48	1.00
837150--837186	19	2.0	18	89	5	56	27	0	8	64	1.21
837707--837772	16	4.4	15	73	17	57	43	0	0	56	0.99
837725--837786	16	3.7	17	70	25	51	46	0	0	53	1.00
839065--839123	2	29.5	2	89	0	91	49	3	1	45	1.28
840525--840627	20	5.3	20	65	16	56	49	0	0	50	1.00
841860--841901	19	2.2	19	91	0	66	50	4	0	45	1.23
842252--842280	11	2.7	11	94	5	51	41	0	0	58	0.98
842250--842326	28	2.7	27	80	13	84	41	0	1	57	1.07
842738--842777	20	2.0	20	95	0	71	25	12	10	52	1.70
842741--842786	20	2.3	20	84	0	56	26	15	10	47	1.78
843060--843093	2	17.0	2	93	0	59	52	0	0	47	1.00
843436--843486	3	17.0	3	100	0	102	66	0	0	33	0.92
843853--843881	2	14.5	2	100	0	58	0	48	0	51	1.00
843885--843931	2	23.5	2	100	0	94	48	0	0	51	1.00
844124--844153	2	15.0	2	100	0	60	50	0	0	50	1.00
846553--846620	33	2.0	33	83	8	84	60	1	1	36	1.15
846606--846635	16	1.9	16	93	6	53	66	0	0	33	0.92
846921--847001	19	4.2	19	76	17	78	28	2	0	69	1.02
847395--847439	21	2.2	21	84	7	58	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
847699--847761	33	2.0	32	90	6	101	41	4	3	50	1.39
848671--848748	28	2.9	27	71	9	70	43	0	0	56	0.99
849235--849270	15	2.3	16	95	4	65	52	0	0	47	1.00
852125--852149	2	12.5	2	100	0	50	48	0	0	52	1.00
852407--852450	2	22.0	2	100	0	88	50	0	0	50	1.00
853199--853237	14	2.9	14	85	11	55	51	2	0	46	1.14
854235--854285	20	2.6	20	84	9	61	54	0	0	45	0.99
864277--864496	109	2.0	110	94	2	390	39	15	12	33	1.85
864998--865026	11	2.5	12	88	11	51	34	0	0	65	0.93
865049--865095	21	2.2	22	77	7	53	46	0	0	53	1.00
865389--865447	28	2.1	29	87	3	84	57	0	0	42	0.98
865387--865447	29	2.1	29	84	9	79	57	0	0	42	0.98
865631--865703	14	5.5	13	72	23	55	65	0	0	34	0.93
865659--865724	10	6.8	10	78	18	61	71	0	0	28	0.87
865662--865710	21	2.4	22	86	10	68	73	0	0	26	0.83
865887--866002	49	2.3	50	78	15	125	56	0	0	43	0.99
865972--866041	22	3.1	22	76	13	54	62	0	0	37	0.95
865979--866025	16	2.9	16	84	9	60	63	0	0	36	0.94
865975--866031	16	3.5	16	78	2	51	66	0	0	33	0.92
866567--866620	2	27.5	2	88	3	83	48	1	1	48	1.23
868282--868312	2	15.5	2	100	0	62	48	0	0	51	1.00
872955--873015	24	2.5	24	79	12	72	27	13	26	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
874214--874255	2	21.0	2	100	0	84	50	0	0	50	1.00
875101--875155	20	2.7	20	80	2	74	41	9	16	32	1.80
875259--875283	12	2.1	12	100	0	50	44	32	8	16	1.76
879697--879759	29	2.1	32	82	14	89	41	1	0	57	1.08
880891--880932	19	2.3	18	84	8	50	52	0	0	47	1.00
880919--880960	22	1.9	22	90	9	68	38	0	0	61	0.96
882493--882580	11	8.3	11	70	15	60	56	2	2	38	1.24
883595--883643	5	9.8	5	89	10	66	38	0	0	61	0.96
883594--883658	34	2.0	31	88	8	94	36	0	0	63	0.95
883601--883647	14	3.3	15	85	14	57	36	0	0	63	0.94

Tables:   1   2   3   4   5   6   7   8