genome.fa.s108.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold108
Parameters: 2 7 7 80 10 50 1000
Length:  1249174

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 527 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308984--309010	13	2.1	13	100	0	54	29	14	14	40	1.86
308991--309031	20	2.0	21	95	4	75	34	12	19	34	1.89
311036--312722	49	34.6	49	78	9	1497	31	17	25	24	1.97
311036--312719	199	8.6	196	86	5	1940	31	17	25	24	1.97
311036--312719	387	4.3	386	85	6	2017	31	17	25	24	1.97
311147--312719	585	2.7	584	91	3	2403	31	17	25	25	1.97
312119--312676	189	3.0	189	89	2	826	30	17	25	26	1.97
312357--312627	136	2.0	138	82	5	334	29	17	26	26	1.97
312646--312814	88	1.9	87	82	4	207	27	17	28	26	1.98
312816--313003	34	5.6	33	81	6	218	34	13	33	18	1.90
312820--313008	66	2.8	67	84	5	222	32	13	33	20	1.91
312980--313239	29	9.0	29	85	2	303	25	18	28	28	1.98
312982--313239	58	4.5	58	87	3	342	25	18	27	28	1.98
314674--314746	10	7.4	10	70	13	53	1	1	15	82	0.81
314680--314727	25	1.9	25	87	8	71	2	0	16	81	0.79
314674--314748	14	5.8	13	79	15	77	1	1	16	81	0.83
328696--328748	21	2.7	20	82	8	72	32	15	13	39	1.85
333615--333640	13	2.0	13	100	0	52	30	15	15	38	1.88
333595--333658	32	2.0	33	90	3	103	28	14	18	39	1.90
333595--333665	19	4.0	18	72	25	62	26	12	21	39	1.89
333679--333731	20	2.6	21	87	3	72	30	20	13	35	1.91
334932--335062	52	2.5	52	82	1	165	33	17	25	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335104--335436	52	6.8	52	76	12	324	33	17	24	24	1.96
335206--335526	43	7.0	43	76	12	264	31	16	25	26	1.97
334973--335531	190	2.9	187	77	10	558	32	17	24	25	1.97
335065--335348	147	1.9	147	87	0	415	32	16	26	24	1.96
335154--335482	95	3.5	95	84	0	415	32	16	24	26	1.96
335427--335494	21	3.2	20	69	19	57	29	13	23	33	1.93
335435--335503	22	3.2	22	67	19	63	26	11	26	36	1.90
335441--335508	21	3.2	21	69	19	68	27	13	27	30	1.94
335519--335748	32	7.2	32	78	9	213	22	17	30	30	1.97
335535--335748	96	2.2	96	84	4	263	21	18	28	30	1.97
335574--335764	64	3.0	64	86	6	244	20	16	31	30	1.95
335759--336221	32	14.7	32	71	12	163	33	12	30	23	1.92
335759--335993	58	3.7	66	75	14	172	32	13	31	22	1.93
335887--335940	26	2.1	26	85	0	72	31	12	31	24	1.93
335759--336007	32	7.8	32	74	9	179	33	12	30	22	1.92
335759--336055	92	3.2	92	82	5	337	34	12	30	22	1.91
336063--336185	33	3.8	32	83	5	151	34	13	30	20	1.92
336035--336215	96	1.9	96	83	8	235	32	13	31	22	1.93
346366--346456	39	2.4	39	88	5	132	34	23	14	28	1.93
346840--346884	22	2.0	23	82	8	56	13	17	0	68	1.20
350305--351392	156	7.0	155	77	7	733	37	21	17	23	1.94
350484--351408	468	2.0	469	80	5	1041	37	21	17	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350302--351363	312	3.4	307	77	6	935	37	21	17	23	1.94
353074--353108	17	2.1	16	89	5	52	0	31	0	68	0.90
353474--353513	21	1.9	21	89	0	62	5	20	35	40	1.74
354036--354079	15	3.0	15	86	3	54	6	6	4	81	0.97
354371--354400	15	1.9	16	93	6	53	80	3	3	13	0.97
355789--355842	14	3.4	16	75	12	58	81	0	5	12	0.85
355782--355830	21	2.3	21	82	3	62	85	2	4	8	0.79
356620--356666	25	1.9	24	83	12	60	17	8	6	68	1.37
362462--362495	16	2.1	16	100	0	68	41	0	17	41	1.50
365704--365750	2	24.5	2	82	8	62	51	2	2	44	1.25
366291--366553	65	4.0	66	76	11	232	45	16	14	23	1.84
366297--366568	67	4.1	67	76	11	263	45	16	14	23	1.84
369190--369241	20	2.5	21	90	3	79	36	15	17	30	1.91
369299--369357	21	2.9	20	79	2	73	32	16	10	40	1.82
370232--370276	21	2.1	22	88	8	67	15	22	15	46	1.83
372589--372706	51	2.3	51	79	2	139	36	13	21	28	1.91
372647--372943	79	3.8	80	79	8	331	33	13	24	28	1.93
372647--372939	158	1.9	158	85	2	410	34	12	24	29	1.92
372883--372991	51	2.1	51	89	3	166	33	10	25	31	1.89
372934--373210	109	2.6	107	79	6	299	35	14	23	27	1.94
373146--373310	51	3.2	50	82	5	179	35	12	23	29	1.91
375675--375728	20	2.7	20	88	5	74	42	12	16	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
375662--375691	13	2.3	13	100	0	60	40	6	16	36	1.75
375613--375771	82	2.0	80	88	2	237	39	13	16	29	1.88
375747--375782	11	3.0	12	88	12	56	41	16	13	27	1.87
375744--375782	13	3.2	13	85	14	64	43	15	12	28	1.83
377364--377403	21	1.9	21	89	0	62	37	15	15	32	1.88
377366--377467	53	1.9	53	86	4	143	35	15	13	35	1.87
385505--385542	16	2.3	17	86	4	51	44	23	5	26	1.74
385647--385813	31	5.5	30	84	8	203	25	31	16	26	1.96
385647--385796	30	4.9	30	84	8	187	24	30	17	28	1.97
385647--385813	61	2.7	61	87	5	232	25	31	16	26	1.96
385797--386073	34	7.8	34	77	10	243	22	31	11	34	1.89
385790--386006	71	3.0	72	86	2	312	21	31	10	36	1.87
386105--386963	49	17.8	49	77	10	815	23	24	18	32	1.97
386105--386964	92	9.0	92	93	1	1162	23	24	18	32	1.97
386450--386517	21	3.2	21	65	19	50	26	25	16	32	1.96
386564--387013	53	8.8	51	83	6	561	22	25	18	34	1.96
387768--387807	21	1.9	21	89	0	62	37	15	15	32	1.88
391812--391881	20	3.5	20	94	1	115	27	15	14	42	1.86
391812--391903	39	2.3	39	83	9	107	28	14	15	42	1.85
391934--391998	33	2.0	32	85	11	87	35	15	16	32	1.91
391954--391978	13	1.9	13	100	0	50	36	16	16	32	1.90
394294--394335	21	2.0	21	90	0	66	33	28	0	38	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394325--394455	64	2.1	62	94	4	228	34	19	3	42	1.69
394852--394882	13	2.4	13	94	0	53	45	16	9	29	1.79
396127--397041	166	5.5	164	78	8	777	28	11	8	51	1.67
396154--396969	330	2.5	324	80	9	789	28	10	8	51	1.66
398188--398426	129	1.9	127	83	5	311	34	10	13	41	1.79
404991--405036	24	1.9	24	90	0	74	47	10	19	21	1.80
405119--405143	13	1.9	13	100	0	50	36	16	16	32	1.90
405100--405165	32	2.0	33	88	2	98	40	18	15	25	1.89
407852--407991	20	6.9	20	70	16	83	35	14	16	34	1.89
407935--407989	19	2.8	19	94	2	92	38	10	18	32	1.85
407974--408000	13	2.1	13	100	0	54	40	14	14	29	1.86
407955--408019	32	2.0	33	87	3	96	41	12	15	30	1.84
415637--415661	13	1.9	13	100	0	50	32	16	16	36	1.90
415617--415681	33	2.0	33	87	0	94	30	18	13	36	1.90
415711--415802	19	4.7	19	87	5	114	41	14	15	29	1.86
415711--415822	39	2.8	41	80	6	124	37	13	17	31	1.89
415861--415912	20	2.6	20	100	0	104	38	19	11	30	1.87
417454--417696	78	3.1	79	80	4	265	32	11	26	29	1.92
417628--417749	53	2.3	52	84	8	167	33	6	31	28	1.83
431698--431729	16	2.0	16	100	0	64	37	18	12	31	1.88
433242--433294	19	2.6	21	85	8	74	32	11	11	45	1.76
433478--433647	52	3.3	51	78	3	151	22	22	16	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433505--433732	52	4.4	52	78	2	190	25	22	16	35	1.94
434297--434336	20	2.0	20	90	0	62	40	10	17	32	1.83
434393--434533	52	2.7	52	82	5	151	31	14	12	41	1.84
436039--436064	13	2.0	13	100	0	52	38	15	15	30	1.88
438281--438325	21	2.1	21	84	8	56	53	4	20	22	1.63
440116--440146	15	2.1	15	93	0	53	48	16	22	12	1.80
442227--442252	13	2.0	13	100	0	52	30	15	15	38	1.88
444811--444836	13	2.0	13	100	0	52	38	15	15	30	1.88
446208--446413	104	2.0	104	91	1	333	30	23	14	32	1.94
448668--448725	21	2.7	21	86	2	80	44	12	12	31	1.78

Tables:   1   2   3   4   5