genome.fa.s108.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold108
Parameters: 2 7 7 80 10 50 1000
Length:  1249174

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 527 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458668--458866	79	2.5	81	80	7	264	32	15	26	26	1.95
458828--458944	51	2.3	51	83	2	155	29	11	30	27	1.92
458988--459104	51	2.3	51	83	0	162	29	11	27	31	1.91
459040--459260	78	2.8	79	81	2	275	31	14	26	28	1.94
461485--461524	20	2.0	21	95	5	73	37	12	15	35	1.85
462027--462110	43	2.0	43	88	2	125	46	14	19	20	1.84
462083--462321	45	5.4	45	75	13	203	41	12	25	20	1.87
462329--464140	62	29.6	62	83	5	2037	28	18	27	25	1.98
462330--464139	122	14.8	122	85	3	2066	28	19	27	25	1.98
471747--471934	20	9.7	20	85	13	200	40	12	15	31	1.85
471848--471877	13	2.3	13	100	0	60	40	13	16	30	1.87
476713--476750	20	1.9	20	88	0	58	42	10	7	39	1.69
477032--477076	23	1.9	23	86	4	63	40	6	8	44	1.62
477685--477710	13	2.0	13	100	0	52	38	15	15	30	1.88
479929--479973	21	2.1	21	84	8	56	53	4	20	22	1.63
481776--481806	15	2.1	15	93	0	53	48	16	22	12	1.80
483885--483923	13	3.0	13	100	0	78	30	15	15	38	1.88
485689--485729	20	2.0	20	95	0	73	36	4	31	26	1.78
486445--486470	13	2.0	13	100	0	52	38	15	15	30	1.88
492301--492339	20	1.9	21	89	5	62	33	28	10	28	1.90
493246--493286	21	2.0	21	85	0	55	17	9	14	58	1.62
495316--495354	20	1.9	21	94	5	71	25	15	23	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
495413--495457	23	1.9	23	81	4	54	42	6	11	40	1.67
498256--498296	21	1.9	22	90	5	66	36	2	21	39	1.67
499197--499300	50	2.0	50	83	5	127	22	13	10	53	1.69
500726--500899	54	3.2	53	76	7	154	31	17	18	32	1.94
500750--501002	54	4.7	54	75	3	177	33	16	15	35	1.90
502041--502096	20	2.8	20	84	13	71	30	14	17	37	1.90
506598--506649	18	2.7	21	75	22	60	50	0	17	32	1.47
508466--508519	20	2.7	19	88	11	74	35	20	12	31	1.90
508549--508601	20	2.7	20	96	0	97	41	11	15	32	1.82
511080--511104	13	1.9	13	100	0	50	32	16	20	32	1.94
514975--515000	13	2.0	13	100	0	52	38	15	15	30	1.88
514957--515020	32	2.0	33	87	3	94	42	14	14	29	1.84
519071--519101	15	2.1	15	93	0	53	48	16	22	12	1.80
521177--521201	13	1.9	13	100	0	50	36	16	16	32	1.90
521642--521685	21	2.1	21	82	0	52	18	43	27	11	1.84
523764--523789	13	2.0	13	100	0	52	38	15	15	30	1.88
527138--527191	20	2.7	19	88	11	74	35	20	12	31	1.90
527220--527272	20	2.7	20	91	2	81	37	18	15	28	1.91
527261--527285	13	1.9	13	100	0	50	32	16	16	36	1.90
527242--527306	33	2.0	32	88	8	96	38	15	15	30	1.88
529085--529137	19	2.8	19	88	0	70	32	16	11	39	1.85
529104--529159	19	2.9	19	81	2	58	33	17	10	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
529188--529242	20	2.7	20	88	8	76	30	16	18	34	1.93
531986--532030	20	2.5	17	82	13	54	2	17	0	80	0.82
536552--536615	33	1.9	33	93	0	110	15	29	14	40	1.86
544167--544210	13	3.4	13	83	0	61	34	11	18	36	1.86
544277--544301	13	1.9	13	100	0	50	36	16	16	32	1.90
544256--544320	33	2.0	33	88	11	98	30	13	21	33	1.92
544671--544714	19	2.4	19	92	3	72	15	20	15	47	1.82
551171--551224	20	2.7	20	80	13	65	38	7	18	35	1.79
551290--551330	20	2.0	21	90	4	66	36	21	7	34	1.82
554450--554526	20	3.9	19	74	14	75	40	15	14	29	1.87
555426--555865	28	15.5	28	86	2	574	23	16	30	28	1.96
557077--557148	31	2.3	30	80	15	83	1	2	15	80	0.89
557102--557149	10	4.6	10	85	10	69	0	0	12	87	0.54
557102--557149	22	2.2	22	92	3	80	0	0	12	87	0.54
557079--557149	32	2.2	33	87	7	101	1	2	14	81	0.87
570071--570116	22	2.1	22	84	8	58	54	8	13	23	1.66
571282--571312	13	2.4	13	94	0	53	35	19	16	29	1.93
575798--575829	15	2.1	15	100	0	64	31	40	0	28	1.57
580349--580388	21	2.0	21	90	5	64	22	20	10	47	1.79
582740--582798	32	1.9	30	83	13	75	59	10	10	20	1.58
583058--583121	32	2.0	33	87	3	94	28	15	15	40	1.88
585648--585686	13	3.0	13	92	0	69	35	15	15	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
589596--589640	21	2.1	21	84	8	56	22	20	4	53	1.63
591523--591581	32	1.9	30	83	13	75	59	10	10	20	1.58
591841--591892	19	2.7	20	87	6	79	28	13	15	42	1.85
1129713--1129754	18	2.3	18	95	4	75	40	4	26	28	1.76
1129872--1130247	186	2.0	188	91	2	605	55	9	8	26	1.61
1132077--1132330	84	3.0	83	70	4	222	42	13	26	16	1.86
1131954--1132417	168	2.8	167	82	3	450	42	13	25	18	1.86
1132113--1132388	84	3.3	83	69	6	223	40	13	28	18	1.88
1132199--1132740	252	2.1	251	79	5	592	42	14	25	17	1.87
1131977--1132831	420	2.0	419	87	2	1227	43	13	24	18	1.86
1132433--1132876	168	2.6	168	81	6	542	43	13	25	17	1.86
1132846--1133210	84	4.4	83	78	7	347	32	13	32	21	1.92
1133337--1134337	43	23.6	43	70	8	282	32	19	28	19	1.96
1133531--1134138	85	7.2	85	72	7	331	32	18	28	20	1.96
1133973--1134303	128	2.6	127	76	7	350	30	19	31	18	1.96
1134082--1134319	85	2.8	82	78	5	224	32	20	29	18	1.96
1133801--1134330	213	2.5	210	82	5	572	31	19	29	19	1.96
1133966--1134414	42	10.6	41	73	7	231	31	19	30	18	1.96
1134125--1134360	85	2.8	85	82	5	239	31	19	30	17	1.95
1133523--1134484	43	22.7	42	71	7	277	32	18	29	19	1.96
1134521--1134731	43	4.9	43	76	4	167	35	18	28	17	1.94
1134520--1134731	86	2.5	86	81	8	252	35	18	28	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1134808--1134905	43	2.2	44	80	7	119	33	13	28	24	1.93
1139147--1140105	155	6.2	152	76	7	656	39	21	16	22	1.92
1139150--1140105	309	3.1	302	74	9	840	39	21	16	23	1.92
1140679--1141148	167	2.8	163	83	10	534	44	10	10	35	1.73
1141043--1141079	12	3.1	12	92	0	56	43	18	10	27	1.83
1142610--1143069	164	2.8	164	84	5	592	51	9	10	28	1.67
1149412--1149458	15	3.1	15	84	6	58	65	0	0	34	0.93
1149422--1149459	16	2.4	16	91	4	60	71	0	0	28	0.87
1150380--1150413	16	2.1	16	88	0	50	44	0	0	55	0.99
1150628--1150654	2	13.5	2	100	0	54	51	0	0	48	1.00
1152755--1152807	27	2.0	27	96	0	97	35	11	7	45	1.69
1152955--1152993	20	1.9	20	84	5	51	48	7	2	41	1.45
1153517--1153550	16	2.1	16	88	0	50	44	0	0	55	0.99
1153766--1153792	2	13.5	2	100	0	54	51	0	0	48	1.00
1154368--1154487	58	2.1	59	90	1	188	49	10	7	32	1.66
1155069--1155113	22	2.0	22	86	0	63	55	17	2	24	1.53
1159765--1159818	20	2.7	19	88	11	74	31	14	18	35	1.91
1160998--1161053	19	2.9	19	89	5	85	33	12	17	35	1.88
1160998--1161052	20	2.8	20	91	2	85	32	12	18	36	1.88
1161097--1161127	13	2.4	13	94	0	53	35	16	12	35	1.87
1164811--1164862	20	2.6	20	96	0	95	30	21	11	36	1.89
1164985--1165031	22	2.2	22	85	14	64	31	21	0	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1172341--1172714	79	4.8	77	76	9	328	32	13	25	27	1.93
1172376--1172714	157	2.2	157	81	5	400	33	14	25	26	1.94
1172686--1172781	50	1.9	50	85	4	131	38	11	22	27	1.89
1175063--1175166	20	4.8	20	74	19	73	43	15	13	27	1.84
1175063--1175212	69	2.2	70	90	1	230	42	14	14	28	1.85
1175811--1175948	41	3.3	40	77	7	127	38	15	22	23	1.93
1176955--1176995	15	2.7	15	84	3	55	87	0	9	2	0.62
1176955--1176993	16	2.5	15	91	4	60	87	0	10	2	0.65
1178439--1178675	28	8.3	29	84	9	244	32	29	18	19	1.96
1178439--1178675	57	4.2	57	81	11	238	32	29	18	19	1.96

Tables:   1   2   3   4   5