genome.fa.s108.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold108
Parameters: 2 7 7 80 10 50 1000
Length:  1249174

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 527 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1178697--1178965	49	5.6	49	71	16	199	25	25	15	33	1.95
1178692--1178968	98	2.9	93	80	12	307	24	25	15	33	1.95
1178831--1178907	39	2.0	39	89	0	118	22	27	18	32	1.97
1178875--1179017	52	2.8	51	79	9	146	23	23	16	35	1.95
1194799--1194897	37	2.6	38	79	3	137	28	22	12	37	1.90
1195190--1195384	28	6.9	28	87	4	214	31	30	17	20	1.96
1195191--1195428	57	4.2	56	78	10	225	32	30	17	19	1.95
1195450--1195893	49	8.9	49	82	5	442	25	25	15	33	1.95
1195445--1195893	98	4.5	98	84	5	488	24	26	15	33	1.95
1195450--1195893	147	3.0	147	87	5	595	25	25	15	33	1.95
1199766--1200083	42	7.5	42	75	8	270	43	11	25	19	1.84
1199766--1200110	83	4.1	81	77	12	306	42	12	25	19	1.86
1200075--1200771	123	5.8	121	83	8	834	29	19	25	24	1.99
1200075--1200777	62	11.7	61	83	6	828	29	19	26	24	1.99
1214132--1214585	79	5.8	78	79	4	356	32	13	25	28	1.94
1214132--1214584	158	2.9	152	79	6	433	32	13	25	28	1.93
1214517--1214648	50	2.6	50	84	3	149	35	12	25	26	1.92
1217556--1217732	41	4.4	41	78	7	148	44	11	24	19	1.84
1217632--1217745	42	2.7	42	80	1	104	47	10	22	19	1.80
1217541--1217821	124	2.3	121	87	4	379	43	12	22	22	1.86
1217631--1217973	41	8.1	41	71	11	185	44	11	22	21	1.85
1217985--1218773	61	13.1	61	83	6	830	29	18	26	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1220383--1220475	43	2.2	43	90	0	141	27	26	16	29	1.97
1220429--1220573	52	2.7	55	81	4	179	27	24	13	33	1.93
1220533--1220659	67	1.9	68	86	1	184	23	25	12	38	1.90
1221404--1221461	20	3.0	20	84	2	73	31	10	12	46	1.74
1221502--1221647	52	2.8	50	86	6	202	34	18	17	29	1.94
1228045--1228234	31	5.9	31	84	9	204	23	31	14	31	1.94
1228137--1228234	34	2.9	34	89	3	135	21	33	13	31	1.92
1228212--1228316	27	3.7	27	78	14	129	20	33	14	31	1.93
1228048--1228327	31	9.0	32	77	14	183	21	31	13	33	1.93
1228178--1228339	60	2.6	61	85	5	229	21	33	12	32	1.91
1228359--1229517	49	25.0	49	75	13	877	25	25	18	30	1.98
1228359--1229516	92	12.5	92	80	11	949	25	25	18	30	1.98
1229118--1229255	39	3.3	39	73	16	132	26	26	20	26	1.99
1228966--1229316	87	3.9	87	82	5	341	25	26	20	28	1.99
1229283--1229512	47	4.7	47	86	5	289	27	25	16	31	1.96
1229354--1229607	101	2.5	100	82	6	257	26	24	16	33	1.96
1230466--1230490	13	1.9	13	100	0	50	32	16	16	36	1.90
1240231--1240255	13	1.9	13	100	0	50	36	16	16	32	1.90
1240208--1240275	33	2.1	33	89	8	104	32	14	16	36	1.89
1240347--1240371	13	1.9	13	100	0	50	36	16	16	32	1.90
1240329--1240394	33	2.0	33	93	0	114	36	18	16	28	1.93
1243835--1244220	79	4.9	78	78	7	386	33	13	25	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1243835--1244219	158	2.4	156	81	5	436	33	12	25	27	1.93
1244164--1244284	50	2.4	50	84	1	143	38	13	20	27	1.90
1247525--1247550	13	2.0	13	100	0	52	38	15	15	30	1.88

Tables:   1   2   3   4   5

The End!