genome.fa.s1085.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1085
Parameters: 2 7 7 80 10 50 1000
Length:  1639209

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 724 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
908991--909068	34	2.3	34	80	2	86	42	15	24	17	1.88
909166--909913	61	12.3	61	84	3	875	29	18	26	26	1.98
909166--909913	181	4.1	181	84	3	941	29	18	26	26	1.98
909166--909913	242	3.1	241	84	3	946	29	18	26	26	1.98
910851--910906	25	2.3	26	84	9	73	1	14	1	82	0.84
912795--912861	28	2.4	28	94	0	116	28	19	26	25	1.99
912821--913529	159	4.5	159	82	5	801	32	12	26	28	1.93
912821--913529	79	8.9	79	80	4	676	32	12	26	28	1.93
916503--916595	34	2.8	33	77	11	98	43	15	20	21	1.88
916545--916684	42	3.4	42	83	7	171	44	12	24	18	1.85
916694--917382	61	11.4	60	82	4	778	28	17	27	26	1.98
916692--917382	181	3.8	181	84	3	854	28	17	27	26	1.98
918349--918390	17	2.4	17	81	14	50	0	14	2	83	0.75
918378--918421	19	2.2	20	88	4	63	0	2	13	84	0.73
923879--923903	4	6.2	4	100	0	50	76	0	0	24	0.80
925965--926027	27	2.3	28	88	2	92	30	17	25	26	1.97
925987--926693	79	9.0	79	79	5	617	34	12	24	28	1.92
925988--926693	237	3.0	236	82	5	804	34	12	24	28	1.92
925989--926693	316	2.2	315	82	6	827	34	12	23	28	1.92
928413--928487	22	3.7	20	82	10	80	37	12	16	34	1.85
928541--928565	13	1.9	13	100	0	50	36	16	8	40	1.77
932627--932760	49	2.7	50	86	5	175	41	14	14	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
939722--939771	25	2.0	25	96	0	91	34	8	10	48	1.66
940462--940532	19	3.7	19	80	1	70	33	15	15	35	1.89
940574--940624	20	2.5	20	87	0	66	39	11	15	33	1.84
950237--950293	19	2.9	19	81	2	69	33	17	15	33	1.92
951261--951301	21	2.0	21	85	9	57	39	12	9	39	1.76
951452--951477	13	2.0	13	100	0	52	38	15	15	30	1.88
951434--951497	32	2.0	33	87	3	94	40	17	14	28	1.88
951935--952001	37	1.9	35	88	11	102	32	11	25	29	1.92
955093--955117	13	1.9	13	100	0	50	36	16	16	32	1.90
956729--956769	21	2.0	21	85	9	57	39	12	9	39	1.76
956920--956945	13	2.0	13	100	0	52	38	15	15	30	1.88
956902--956965	32	2.0	33	87	3	94	40	17	14	28	1.88
957403--957469	37	1.9	35	88	11	102	32	11	25	29	1.92
959094--959149	20	2.7	21	77	5	60	28	12	14	44	1.81
959723--959827	31	3.4	30	75	7	88	20	25	26	26	1.99
959769--960114	149	2.4	149	80	8	372	21	23	25	28	1.99
960057--960159	31	3.3	31	79	2	100	14	22	35	27	1.93
960202--960368	77	2.2	76	87	5	230	39	14	27	18	1.89
960306--960412	42	2.5	43	77	8	112	42	11	27	19	1.85
966058--966109	27	1.9	27	84	0	68	34	21	26	17	1.95
967762--967918	82	1.9	82	98	0	305	24	11	29	33	1.91
970686--970767	39	2.1	39	93	0	137	30	12	19	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
971999--972341	167	2.1	166	80	6	381	30	12	8	48	1.70
972881--972929	12	3.8	13	80	20	59	71	0	28	0	0.86
972882--972928	24	1.9	25	91	4	78	70	0	29	0	0.88
974547--974776	97	2.4	97	91	1	372	29	30	11	29	1.91
987562--987905	29	12.1	28	82	7	367	31	28	16	22	1.96
987912--987994	31	2.7	31	71	0	94	26	32	24	16	1.96
989479--989526	13	3.9	12	78	13	53	72	2	25	0	0.95
990267--990350	19	4.7	19	81	18	108	33	11	17	36	1.87
990307--990331	13	1.9	13	100	0	50	36	16	16	32	1.90
990288--990355	32	2.1	32	97	0	127	33	11	17	36	1.86
990393--990420	13	2.2	13	100	0	56	28	14	17	39	1.89
1004353--1004400	9	5.2	9	84	2	60	81	16	0	2	0.79
1004375--1004409	15	2.3	15	90	0	52	82	17	0	0	0.66
1005848--1006655	29	27.7	29	82	7	976	28	30	16	24	1.96
1005848--1006660	59	13.9	59	88	4	1161	28	30	16	24	1.96
1006723--1007086	43	8.0	44	82	10	448	26	23	18	31	1.98
1006718--1007138	92	4.5	92	93	1	680	25	24	18	32	1.97
1006996--1007063	22	3.1	22	62	26	54	26	25	17	30	1.97
1007039--1007176	52	2.6	55	82	5	167	25	24	15	34	1.94
1007843--1007867	13	1.9	13	100	0	50	36	16	16	32	1.90
1007823--1007891	32	2.1	33	94	2	122	34	11	17	36	1.86
1007961--1008141	52	3.5	52	97	0	335	35	18	18	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1008983--1009023	21	1.9	22	90	5	66	24	19	14	41	1.89
1017136--1017161	7	3.7	7	100	0	52	61	0	11	26	1.30
1018604--1018703	51	2.0	51	89	0	155	29	16	24	31	1.96
1021090--1021344	84	3.0	82	81	6	251	32	22	9	35	1.86
1023626--1023681	20	2.7	21	86	2	78	33	10	16	39	1.83
1024111--1024184	38	2.0	37	91	2	121	33	12	29	24	1.91
1025767--1025817	21	2.4	22	80	9	61	60	3	11	23	1.47
1028821--1028887	19	3.8	19	70	24	65	29	13	14	41	1.85
1028841--1028865	13	1.9	13	100	0	50	32	16	16	36	1.90
1028820--1028881	33	1.9	33	93	3	108	29	14	16	40	1.88
1028910--1028982	37	2.0	37	91	0	119	36	20	10	31	1.87
1028979--1029035	20	2.8	21	89	2	89	31	15	15	36	1.90
1029465--1029539	38	2.0	38	89	2	116	32	12	32	24	1.91
1031802--1031828	13	2.1	13	100	0	54	55	7	22	14	1.64
1036463--1037109	354	1.8	348	85	3	902	43	9	10	36	1.71
1040143--1040172	2	15.0	2	100	0	60	50	0	0	50	1.00
1046008--1046051	21	2.1	21	83	8	54	50	0	0	50	1.00
1046007--1046083	35	2.2	34	84	6	93	50	0	1	48	1.09
1046621--1046669	20	2.5	20	86	0	71	18	0	6	75	1.00
1046763--1046795	17	1.9	17	93	0	57	12	0	12	75	1.04
1048181--1048279	20	4.8	20	80	9	101	37	15	9	38	1.79
1052641--1052717	28	2.8	28	83	0	82	23	19	33	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1052700--1052921	52	4.3	51	81	2	228	31	11	27	30	1.91
1052904--1052979	27	2.8	28	85	2	100	19	21	35	23	1.96
1052591--1053086	263	1.9	263	88	4	759	29	12	28	29	1.93
1055447--1055472	13	2.0	13	100	0	52	38	15	15	30	1.88
1055426--1055490	34	1.9	33	87	3	94	44	10	16	27	1.81
1055516--1055567	13	3.5	13	73	26	50	36	17	13	32	1.89
1055524--1055609	19	4.7	19	72	20	76	37	16	12	33	1.87
1055516--1055588	32	2.3	32	97	0	137	35	17	12	34	1.88
1056476--1056563	26	3.3	26	67	14	79	21	20	31	26	1.98
1056650--1057082	61	7.3	60	85	6	528	27	20	26	25	1.99
1056788--1056874	28	3.1	28	65	15	72	27	19	26	26	1.99
1056785--1056868	27	3.1	27	64	16	64	26	21	26	26	1.99
1056430--1057087	55	11.4	59	84	8	688	26	20	27	26	1.99
1058077--1058112	10	3.5	10	88	7	54	0	2	11	86	0.68
1058067--1058112	15	3.0	15	80	3	56	0	4	10	84	0.75
1058077--1058111	11	3.2	11	92	8	54	0	2	8	88	0.61
1066617--1066801	79	2.3	79	80	8	207	29	16	29	24	1.97
1066813--1066948	52	2.7	49	75	13	125	28	8	27	36	1.85
1424556--1424607	13	3.5	13	73	26	50	34	17	15	32	1.91
1427767--1427950	20	8.7	20	74	17	149	38	13	16	31	1.88
1427767--1427950	40	4.4	39	77	17	170	38	13	16	31	1.88
1427785--1427952	91	1.8	91	94	0	300	37	14	17	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1428731--1429970	28	44.7	28	84	5	750	26	15	30	27	1.96
1429342--1430153	27	29.4	27	85	4	951	27	14	32	25	1.95
1428799--1430170	84	16.5	81	80	8	605	26	15	30	26	1.96
1429342--1430151	83	9.8	82	84	6	877	27	14	32	25	1.95
1434917--1434977	19	3.6	17	75	25	58	34	14	16	34	1.89
1434934--1434958	13	1.9	13	100	0	50	36	16	16	32	1.90
1434917--1434994	32	2.5	32	87	2	113	35	16	15	32	1.90
1435029--1435054	13	2.0	13	100	0	52	30	15	15	38	1.88
1441242--1441563	49	6.5	49	79	5	301	27	24	15	32	1.95
1441265--1441529	101	2.7	97	85	4	325	26	24	15	33	1.95

Tables:   1   2   3   4   5   6   7