genome.fa.s125.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold125
Parameters: 2 7 7 80 10 50 1000
Length:  3608436

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  18  of  18  ( 2131 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3370264--3370313	19	2.5	21	87	12	70	34	0	0	66	0.92
3370235--3370310	25	3.0	25	71	5	73	36	0	0	63	0.95
3370208--3370327	16	7.4	16	68	18	61	38	0	0	61	0.96
3370777--3370806	15	2.0	15	100	0	60	73	0	0	26	0.84
3370967--3371071	39	2.8	38	73	13	101	43	1	0	54	1.11
3371027--3371067	21	1.9	22	85	5	57	51	0	0	48	1.00
3371487--3371511	13	1.9	13	100	0	50	48	20	0	32	1.50
3376957--3377014	28	2.1	28	100	0	116	44	27	6	20	1.77
3381767--3381807	15	2.5	17	80	15	59	53	0	0	46	1.00
3381776--3381807	15	2.1	15	100	0	64	53	0	0	46	1.00
3381810--3381853	19	2.4	19	85	7	56	50	0	0	50	1.00
3381814--3381871	19	3.4	16	75	15	53	53	0	0	46	1.00
3382825--3382874	10	5.0	10	78	9	57	34	0	0	66	0.92
3382823--3382874	20	2.6	21	82	14	65	34	0	0	65	0.93
3382823--3382906	32	2.8	32	82	10	97	40	0	0	59	0.97
3385769--3385797	15	1.9	15	100	0	58	20	24	41	13	1.89
3389524--3389566	2	21.5	2	100	0	86	48	0	0	51	1.00
3390633--3390756	63	2.0	64	93	1	214	38	14	8	37	1.77
3393658--3393707	8	6.2	8	76	17	50	40	0	0	60	0.97
3393660--3393708	18	2.9	18	72	27	54	40	0	0	59	0.98
3393692--3393737	23	2.0	24	86	4	67	43	0	2	54	1.12
3403837--3403863	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3404395--3404448	28	2.0	26	86	13	74	61	1	1	35	1.18
3404510--3404610	8	11.9	8	74	17	53	54	0	0	43	1.13
3404575--3404609	2	17.5	2	100	0	70	51	0	0	48	1.00
3406291--3406321	16	1.9	16	93	0	53	22	0	6	70	1.09
3406458--3406491	3	11.7	3	93	6	61	64	0	0	35	0.94
3410075--3410112	2	19.0	2	100	0	76	50	0	0	50	1.00
3410800--3410830	3	10.3	3	100	0	62	67	0	0	32	0.91
3412659--3412693	13	2.5	15	86	13	56	34	0	0	65	0.93
3412793--3412853	21	3.0	20	72	21	56	44	1	3	50	1.28
3412791--3412887	42	2.3	40	79	12	97	44	1	2	52	1.19
3422994--3423026	12	2.6	13	85	9	50	42	0	0	57	0.98
3429037--3429089	3	17.7	3	100	0	106	33	0	0	66	0.92
3429719--3429748	2	15.0	2	92	0	51	50	3	0	46	1.18
3434857--3434894	2	19.0	2	100	0	76	50	0	0	50	1.00
3435080--3435169	26	3.5	26	69	21	71	44	1	1	53	1.15
3435864--3435916	27	2.0	27	100	0	106	43	11	7	37	1.69
3436920--3436956	3	12.3	3	100	0	74	32	0	0	67	0.91
3438374--3438457	10	8.3	10	67	20	50	54	0	2	42	1.13
3438394--3438454	18	3.6	17	73	24	58	54	0	0	45	1.00
3438448--3438494	17	2.9	16	78	6	58	55	0	0	44	0.99
3453099--3453149	5	10.4	5	82	4	50	39	45	11	3	1.59
3453098--3453144	24	2.0	24	95	0	85	38	44	10	6	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3457224--3457255	2	16.0	2	100	0	64	50	0	50	0	1.00
3457494--3457520	2	13.5	2	100	0	54	51	0	0	48	1.00
3464841--3464876	2	18.0	2	100	0	72	50	0	0	50	1.00
3466821--3466905	21	4.0	21	68	26	63	50	3	2	43	1.32
3466852--3466911	21	2.7	23	85	7	72	51	3	1	43	1.28
3468249--3468281	17	2.0	17	88	5	50	51	0	0	48	1.00
3470560--3470598	17	2.2	18	86	4	53	33	5	2	58	1.33
3478490--3478516	2	13.5	2	100	0	54	48	0	0	51	1.00
3479662--3479704	3	14.3	3	95	0	77	32	2	0	65	1.06
3484649--3484706	25	2.3	25	82	8	64	55	0	0	44	0.99
3484883--3484973	13	7.2	13	70	24	54	50	0	0	49	1.00
3484866--3484976	25	4.0	27	73	15	77	46	0	0	51	1.13
3486177--3486210	3	11.3	3	93	0	59	2	35	29	32	1.73
3494451--3494494	13	3.3	13	81	6	52	29	0	0	70	0.88
3494442--3494512	27	2.7	27	73	2	72	39	0	0	60	0.97
3494494--3494524	16	1.9	16	93	0	53	45	0	0	54	0.99
3494773--3494816	18	2.5	17	85	10	61	29	0	0	70	0.88
3494905--3494930	7	3.7	7	100	0	52	53	0	0	46	1.00
3494976--3495020	21	2.3	21	88	11	69	62	0	0	37	0.96
3496766--3496808	2	21.5	2	100	0	86	51	0	0	48	1.00
3498324--3498409	38	2.3	38	76	11	95	40	4	2	52	1.35
3504011--3504054	2	22.0	2	95	0	79	47	0	2	50	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3507883--3507913	2	15.5	2	93	0	53	0	45	3	51	1.17
3512161--3512221	2	30.5	2	100	0	122	0	49	0	50	1.00
3517432--3517477	2	23.0	2	95	0	83	47	0	0	52	1.00
3517477--3517530	2	27.0	2	100	0	108	50	0	50	0	1.00
3517853--3517879	2	13.5	2	100	0	54	48	0	0	51	1.00
3521489--3521561	30	2.4	29	82	8	76	36	9	4	49	1.55
3521626--3521667	20	2.2	20	86	4	59	54	0	0	45	0.99
3546482--3546510	3	9.7	3	100	0	58	65	0	0	34	0.93
3568919--3568944	12	2.2	12	100	0	52	50	7	42	0	1.31
3577017--3577047	2	15.5	2	100	0	62	48	0	0	51	1.00
3579681--3579731	20	2.4	21	87	6	68	50	1	3	43	1.31
3584055--3584101	3	15.7	3	100	0	94	34	0	0	65	0.93
3585773--3585816	22	2.0	22	100	0	88	27	13	22	36	1.92
3588100--3588165	27	2.4	28	87	7	91	22	6	22	48	1.72
3588247--3588292	20	2.3	20	92	0	74	13	47	4	34	1.62
3592668--3592736	27	2.5	27	83	6	77	24	7	21	46	1.77
3597838--3597882	11	4.1	11	86	8	56	66	0	0	33	0.92
3597807--3597921	41	2.9	39	80	10	119	64	1	0	33	1.10
3597831--3597899	12	5.8	12	81	6	79	68	0	0	31	0.90
3597854--3597921	17	3.8	17	79	11	73	67	2	0	29	1.05
3597851--3597924	12	6.1	12	75	9	60	66	2	0	31	1.06
3599447--3599507	25	2.5	24	79	12	70	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3599456--3599523	28	2.7	26	78	13	72	45	0	0	54	0.99
3599460--3599517	26	2.3	25	82	8	73	44	0	0	55	0.99
3606675--3606725	14	3.8	13	73	21	52	45	0	0	54	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18

The End!