genome.fa.s125.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold125
Parameters: 2 7 7 80 10 50 1000
Length:  3608436

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  5  of  18  ( 2131 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
652544--652593	19	2.7	20	78	9	52	52	4	0	44	1.20
652579--652649	28	2.5	28	79	4	72	49	0	0	50	1.00
652611--652650	19	2.0	20	85	4	55	57	0	0	42	0.98
653226--653273	2	25.0	2	83	8	64	0	45	2	52	1.12
664919--664975	23	2.5	23	72	13	55	56	0	1	42	1.10
664961--665022	10	6.1	10	76	10	63	51	0	1	46	1.10
664938--665023	31	2.8	30	82	10	93	51	0	2	46	1.13
667758--667841	37	2.2	39	80	6	100	47	1	1	50	1.16
668779--668879	52	1.9	51	82	11	125	51	0	1	45	1.19
671202--671243	22	1.9	23	90	9	70	64	0	0	35	0.94
671479--671504	9	2.9	9	100	0	52	57	0	7	34	1.27
674821--674865	22	2.0	22	83	8	56	57	2	0	40	1.11
676038--676098	27	2.4	26	81	10	74	40	0	4	54	1.22
677349--677393	24	1.9	23	81	4	54	53	2	2	42	1.25
677402--677467	32	2.1	32	97	0	123	54	6	3	36	1.41
677875--677903	2	15.0	2	92	7	51	0	51	0	48	1.00
689877--689918	22	1.9	23	90	9	70	64	0	0	35	0.94
691137--691198	26	2.2	28	75	13	67	53	0	0	46	1.00
691099--691195	30	3.2	30	77	18	96	49	1	0	49	1.07
693505--693618	17	6.7	18	67	19	57	54	0	0	45	0.99
693578--693618	18	2.2	19	86	4	57	48	0	0	51	1.00
694812--694841	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
698005--698074	20	3.5	20	68	3	50	30	10	1	58	1.39
698019--698069	21	2.5	20	81	6	66	27	9	1	60	1.39
698064--698106	18	2.2	20	80	8	54	30	23	6	39	1.81
698693--698732	18	2.2	19	86	4	55	47	0	2	50	1.14
700736--700766	2	15.5	2	93	0	53	51	45	3	0	1.17
708025--708140	61	1.9	60	85	5	162	37	11	13	37	1.81
708266--708295	2	15.0	2	100	0	60	50	0	0	50	1.00
708691--708715	2	12.5	2	100	0	50	52	0	0	48	1.00
711367--711495	39	3.3	39	96	0	231	36	10	12	40	1.78
714128--714185	29	1.9	31	82	6	75	36	1	5	56	1.32
715596--715625	13	2.2	14	94	5	53	30	3	0	66	1.07
715787--715839	22	2.2	24	77	19	65	45	7	16	30	1.75
715799--715843	22	2.0	22	100	0	90	44	8	17	28	1.79
718165--718219	14	3.9	14	80	17	60	65	1	0	32	1.03
718158--718218	31	2.1	27	88	11	86	63	3	0	32	1.10
718158--718218	14	4.2	15	76	19	58	63	3	0	32	1.10
718167--718227	17	3.9	16	77	16	65	63	1	1	32	1.13
719063--719323	129	2.0	127	88	4	391	43	7	6	42	1.59
732549--732602	20	2.7	20	72	11	56	53	0	1	44	1.11
732591--732645	16	3.4	17	78	19	62	63	0	1	34	1.05
732612--732676	14	4.9	13	75	16	53	69	1	1	27	1.07
733091--733133	21	2.0	21	82	8	52	46	2	2	48	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
733544--733581	21	1.9	20	89	10	60	5	13	5	76	1.13
735061--735137	11	6.9	11	74	14	59	68	0	0	31	0.90
735065--735128	33	1.9	34	87	9	96	73	0	0	26	0.84
735079--735128	17	3.0	18	86	13	56	76	0	0	24	0.80
735126--735162	19	1.9	19	88	0	56	45	2	0	51	1.15
735111--735239	55	2.3	56	82	14	151	54	2	0	43	1.13
736295--736324	15	2.0	15	93	0	51	43	0	0	56	0.99
736590--736620	5	6.4	5	96	3	55	58	0	0	41	0.98
737319--737366	18	2.7	18	83	3	53	35	6	0	58	1.23
737804--737853	21	2.4	21	72	21	52	38	0	0	62	0.96
737852--737914	20	3.3	19	78	10	58	66	0	0	33	0.92
737867--737919	20	2.7	20	80	11	65	64	0	0	35	0.94
743451--743480	15	2.0	15	93	0	51	16	20	6	56	1.62
745197--745253	14	4.1	14	77	4	62	40	0	1	57	1.09
745896--745941	24	1.9	24	90	0	74	30	0	2	67	1.03
747335--747381	20	2.2	21	77	11	60	59	0	0	40	0.97
747343--747389	20	2.3	21	85	7	69	55	2	0	42	1.12
748639--748676	17	2.2	18	90	4	60	52	2	0	44	1.14
749053--749116	26	2.5	26	82	5	76	28	1	4	65	1.21
750380--750422	2	21.5	2	100	0	86	48	0	0	51	1.00
750841--750887	23	2.0	24	87	4	69	38	0	10	51	1.37
750839--750893	23	2.3	23	82	11	67	36	0	10	52	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
750896--750972	35	2.2	35	95	0	136	62	0	5	32	1.17
750980--751028	20	2.5	20	80	9	57	59	0	0	40	0.98
753757--753835	19	4.1	18	72	18	61	64	2	0	32	1.07
753744--753803	20	3.0	20	80	9	68	70	5	0	25	1.08
753797--753904	10	10.9	10	65	16	55	59	1	0	37	1.15
754126--754171	23	2.0	22	84	16	58	58	0	0	41	0.98
754214--754261	11	4.3	11	77	15	53	43	0	0	56	0.99
754215--754260	22	2.3	19	88	11	65	41	0	0	58	0.98
754486--754525	2	20.0	2	100	0	80	50	0	0	50	1.00
757008--757054	16	2.7	18	77	12	53	40	0	0	59	0.97
758031--758112	27	2.9	28	84	12	98	50	0	0	50	1.00
762198--762236	17	2.3	18	83	16	57	43	2	0	53	1.14
762201--762232	16	1.9	17	93	6	57	46	3	0	50	1.17
762955--763024	28	2.6	27	80	10	79	37	2	0	60	1.12
762955--763025	29	2.6	26	77	12	70	38	2	0	59	1.12
763022--763070	16	3.0	16	77	14	55	57	0	0	42	0.99
763027--763070	16	2.8	16	83	10	56	59	0	0	40	0.98
765108--765156	15	3.2	15	78	21	57	34	0	2	63	1.06
765511--765550	2	20.0	2	89	0	62	45	0	5	50	1.23
765805--765842	19	2.1	19	85	9	53	52	0	0	47	1.00
765830--765871	19	2.2	20	86	4	59	66	0	0	33	0.92
765941--765992	20	2.7	20	82	14	72	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
766112--766147	16	2.2	16	90	0	54	69	0	0	30	0.89
766062--766173	28	4.1	27	75	11	86	59	1	0	37	1.14
768654--768701	2	22.5	2	81	12	51	6	41	2	50	1.39
771456--771486	2	15.5	2	100	0	62	48	0	0	51	1.00
773072--773097	13	2.0	13	100	0	52	61	0	0	38	0.96
773352--773389	2	19.0	2	100	0	76	50	0	0	50	1.00
773704--773745	22	1.9	22	100	0	84	61	9	9	19	1.53
774068--774106	15	2.6	16	84	12	55	28	0	2	69	1.02
774818--774899	32	2.6	31	81	9	94	48	4	3	42	1.42
774958--775003	24	1.9	24	86	0	65	52	2	4	41	1.33
776574--776629	14	3.4	16	83	16	71	33	0	0	66	0.92
776575--776616	18	2.3	18	91	4	66	33	0	0	66	0.92
777434--777474	14	2.9	15	85	7	50	56	0	0	43	0.99
777655--777693	18	2.2	18	86	4	53	58	5	7	28	1.47
791701--791743	21	2.0	21	82	8	52	48	0	0	51	1.00
792771--792810	19	2.1	19	90	0	62	7	17	0	75	1.03
794226--794296	28	2.8	24	73	19	63	63	0	2	33	1.09
794249--794318	17	4.3	17	75	21	69	60	0	1	38	1.06
794277--794401	6	20.2	6	68	23	55	60	0	0	39	1.03
794296--794357	15	4.3	15	69	19	51	56	0	0	43	0.99
794278--794400	7	15.4	8	70	20	80	59	0	0	39	1.03
794274--794405	16	9.4	14	66	26	66	59	0	0	40	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
794306--794407	38	2.5	40	77	18	104	58	0	0	40	1.04
796995--797075	37	2.2	38	80	14	98	44	1	0	54	1.08
804817--804869	22	2.3	23	87	3	72	60	0	0	39	0.97
806754--806800	3	15.7	3	100	0	94	68	0	0	31	0.90
808294--808456	80	2.0	81	96	2	301	33	16	12	38	1.86
809650--809674	1	25.0	1	100	0	50	100	0	0	0	0.00
812436--812484	20	2.5	20	84	15	66	55	0	0	44	0.99
812437--812486	21	2.4	20	84	15	66	56	0	0	44	0.99
812609--812634	3	8.7	3	100	0	52	30	0	0	69	0.89
814506--814574	23	3.0	23	65	4	59	55	14	0	30	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18