genome.fa.s125.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold125
Parameters: 2 7 7 80 10 50 1000
Length:  3608436

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  6  of  18  ( 2131 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
814483--814604	45	2.7	44	85	2	163	54	18	0	27	1.49
814993--815459	234	2.0	234	96	0	871	37	15	14	32	1.88
817838--817887	2	25.0	2	100	0	100	50	0	0	50	1.00
822179--822301	65	1.9	65	86	0	174	40	21	13	24	1.89
827710--827775	31	2.1	31	88	5	98	46	1	0	51	1.10
828371--828410	19	2.0	20	85	4	55	60	0	0	40	0.97
828355--828425	25	2.6	25	82	10	70	54	2	1	40	1.23
829633--829694	21	3.0	21	67	6	54	45	4	1	48	1.33
830008--830154	19	7.2	19	71	20	84	42	0	0	56	1.04
830039--830108	20	3.5	20	71	11	54	45	1	0	52	1.09
830018--830175	45	3.7	44	73	13	134	42	0	0	56	1.03
830038--830162	22	6.0	21	67	22	52	43	0	0	56	1.05
830127--830171	12	4.0	12	83	13	60	35	0	0	64	0.94
830127--830171	22	2.0	23	86	4	65	35	0	0	64	0.94
830340--830364	3	8.3	3	100	0	50	32	0	0	68	0.90
830527--830608	33	2.3	36	83	8	98	54	1	0	43	1.07
835693--835763	33	2.2	32	90	7	117	47	0	5	46	1.26
839227--839252	3	8.7	3	100	0	52	34	0	0	65	0.93
840885--841144	50	5.2	50	83	2	317	34	19	16	28	1.94
845137--845186	19	2.6	19	80	0	55	30	18	24	28	1.97
845438--845647	50	4.2	50	89	0	258	34	19	16	29	1.94
848986--849017	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
850222--850282	29	2.1	29	96	0	113	44	8	18	29	1.78
851724--851762	14	2.9	13	85	7	51	41	0	0	58	0.98
851729--851770	14	3.2	13	87	9	59	40	0	0	59	0.97
851726--851780	13	4.5	12	79	9	58	40	0	1	58	1.09
851923--851953	13	2.3	14	94	5	55	54	0	0	45	0.99
851873--851957	25	3.4	25	67	20	61	52	1	1	44	1.16
852110--852172	18	3.6	18	76	20	53	44	0	0	55	0.99
852125--852200	21	3.5	21	70	10	64	43	0	0	56	0.99
852952--852997	21	2.1	23	84	8	60	47	0	0	52	1.00
852991--853018	10	2.8	10	100	0	56	28	0	0	71	0.86
853527--853654	30	4.3	29	85	7	150	35	0	1	62	1.10
853527--853652	59	2.1	59	81	10	150	34	0	1	62	1.10
855831--855855	13	1.9	13	100	0	50	68	0	0	32	0.90
856887--856975	2	44.0	2	72	8	56	42	3	8	44	1.52
857106--857141	6	6.0	6	100	0	72	83	16	0	0	0.65
857763--857797	17	2.1	17	88	0	52	45	5	5	42	1.51
858064--858090	6	4.5	6	100	0	54	14	33	0	51	1.43
859826--859869	20	2.2	20	88	11	65	40	2	0	56	1.11
860033--860069	18	2.2	18	85	9	51	54	0	5	40	1.24
862401--862427	2	13.5	2	100	0	54	48	0	0	51	1.00
867132--867203	26	2.9	25	70	12	67	51	0	1	47	1.09
871757--871794	2	19.0	2	100	0	76	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
871865--871890	2	13.0	2	100	0	52	50	0	0	50	1.00
876323--876528	50	4.1	50	81	3	227	34	19	16	29	1.94
876321--876528	100	2.1	100	83	8	271	34	20	15	29	1.94
880367--880626	50	5.2	50	87	1	369	34	21	16	27	1.95
880367--880626	100	2.6	100	92	0	421	34	21	16	27	1.95
882838--882876	19	2.1	19	85	9	53	30	0	0	69	0.89
882958--883015	18	3.5	15	76	23	55	27	0	0	72	0.85
883931--883983	21	2.6	19	82	11	61	54	0	0	45	0.99
885810--885896	28	3.1	28	93	0	147	27	13	18	40	1.88
892219--892264	23	2.0	23	84	12	60	52	0	0	47	1.00
892279--892345	30	2.2	29	82	7	80	55	1	1	41	1.18
892834--892876	13	3.3	13	73	0	50	83	2	9	4	0.87
896161--896194	2	17.0	2	100	0	68	50	0	0	50	1.00
898213--898252	19	2.1	19	85	0	53	45	5	0	50	1.23
898650--898758	20	5.1	20	68	19	67	48	1	0	49	1.11
898744--898803	28	2.0	29	84	9	77	55	1	0	43	1.10
899035--899069	14	2.5	14	85	0	52	31	0	2	65	1.07
899009--899151	71	2.0	71	93	1	243	46	5	4	44	1.46
899740--899796	27	2.1	27	87	12	82	66	0	0	33	0.92
899984--900045	22	2.8	21	79	16	54	35	0	1	62	1.05
899976--900035	29	2.1	29	81	12	70	36	0	1	61	1.06
900050--900116	22	3.1	21	78	8	55	59	1	0	38	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
900075--900132	23	2.5	22	83	8	71	65	1	0	32	1.03
900075--900156	24	3.4	24	74	14	71	64	1	2	31	1.14
900411--900469	29	2.0	30	87	9	86	50	1	0	47	1.11
900923--900988	30	2.0	35	83	13	88	33	0	4	62	1.16
901370--901421	25	2.1	25	100	0	104	36	0	26	36	1.57
906841--906875	14	2.4	14	90	4	52	71	2	0	25	1.00
906841--906882	15	2.8	15	85	10	59	69	2	0	28	1.01
907049--907152	23	4.7	22	70	21	76	43	1	1	52	1.23
907132--907168	16	2.4	16	95	4	67	45	0	0	54	1.00
907118--907156	13	3.2	13	79	20	57	43	0	0	56	0.99
907112--907156	23	2.0	23	100	0	90	42	0	0	57	0.98
907273--907310	13	2.9	14	88	11	53	55	2	0	42	1.14
907271--907331	29	2.1	29	81	3	70	54	1	0	44	1.10
914688--914729	3	14.0	3	94	0	75	69	0	30	0	0.89
922358--922447	25	3.5	26	72	10	69	44	3	1	51	1.25
922400--922457	25	2.3	25	75	0	62	44	1	3	50	1.29
925739--925869	34	3.9	34	80	11	153	46	12	12	28	1.78
926229--927135	454	2.0	449	88	3	1329	43	16	17	22	1.88
928775--928805	2	15.5	2	100	0	62	51	0	0	48	1.00
929131--929167	2	19.0	2	88	5	58	48	0	2	48	1.15
936539--936706	84	2.0	84	97	0	318	47	10	19	22	1.80
936864--936911	24	2.0	25	91	4	80	35	20	14	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
937124--937432	153	2.0	153	94	0	546	27	19	23	29	1.98
941095--941157	27	2.5	25	80	12	67	20	36	12	30	1.90
950979--951163	34	5.5	34	86	0	255	26	7	26	40	1.81
951468--951530	19	3.3	19	90	0	90	28	17	19	34	1.94
955596--955780	34	5.5	34	86	0	255	26	7	26	40	1.81
961734--961772	15	2.4	17	83	8	55	61	2	0	35	1.10
963422--963451	2	15.0	2	92	0	51	46	0	3	50	1.18
967201--967244	13	3.5	13	75	6	54	40	2	0	56	1.11
967205--967265	22	2.6	24	80	19	76	45	3	0	50	1.17
967298--967328	7	4.4	7	100	0	62	74	0	0	25	0.82
969474--969582	54	2.1	52	91	3	173	51	5	4	38	1.46
969932--969957	7	3.7	7	100	0	52	73	0	0	26	0.84
970609--970662	21	2.5	20	88	8	72	64	3	0	31	1.11
970610--970670	10	6.0	10	78	21	65	65	3	0	31	1.09
970681--970747	17	4.1	16	76	14	66	50	2	0	46	1.16
970630--970709	28	3.0	26	78	8	90	58	2	0	38	1.11
970984--971015	12	2.7	12	95	0	55	31	62	0	6	1.20
973767--973836	28	2.5	27	86	6	104	67	1	0	31	1.00
975009--975074	35	1.9	34	90	3	105	57	0	1	40	1.08
975071--975120	22	2.4	21	83	9	66	52	2	4	42	1.31
976574--976605	3	10.7	3	100	0	64	68	0	0	31	0.90
977742--977776	17	2.1	17	94	0	61	45	14	0	40	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
977806--977919	56	2.0	56	83	3	140	31	10	17	40	1.84
979867--979925	28	2.1	29	93	3	102	44	6	22	27	1.78
981627--981674	16	2.9	17	84	9	64	70	2	27	0	0.98
981596--981677	13	6.1	13	68	21	53	73	1	24	1	0.98
982695--982731	7	5.6	7	84	9	51	86	0	13	0	0.57
982695--982734	13	3.1	13	82	13	55	82	0	17	0	0.67
986609--986660	2	26.0	2	100	0	104	0	50	0	50	1.00
986930--986962	2	17.0	2	93	6	59	51	0	0	48	1.00
987107--987147	20	2.0	20	85	0	55	63	0	0	36	0.95
987285--987335	15	3.5	15	72	5	50	64	3	0	31	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18