genome.fa.s137.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold137
Parameters: 2 7 7 80 10 50 1000
Length:  675198

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214795--214851	22	2.6	22	82	0	69	59	0	0	40	0.97
216957--217015	23	2.4	25	78	13	61	38	1	3	55	1.26
220452--220485	16	2.1	16	88	0	50	55	2	0	41	1.15
223981--224042	5	12.2	5	80	13	65	35	0	1	62	1.05
224520--224593	26	2.8	28	80	13	77	52	0	2	44	1.15
224546--224596	15	3.5	15	76	12	52	56	0	0	43	0.99
224892--224932	19	2.2	19	87	12	59	63	0	0	36	0.95
224892--224942	19	2.6	20	76	17	54	56	0	0	43	0.99
227754--227834	31	2.6	32	82	3	103	25	30	11	32	1.91
227875--228322	29	15.2	29	70	11	214	26	27	12	33	1.93
227923--228128	57	3.6	57	77	7	170	26	29	12	32	1.92
227901--228088	86	2.2	86	81	8	213	26	29	12	31	1.92
227868--228314	115	3.8	117	73	12	299	25	28	12	33	1.92
228236--228307	30	2.4	30	81	9	85	25	29	15	30	1.96
228315--228697	32	11.9	32	70	6	182	32	25	15	27	1.95
228410--228701	96	3.0	96	73	6	259	31	26	15	27	1.95
228433--228742	64	4.8	64	75	5	216	31	26	15	26	1.96
228729--228841	59	1.9	59	81	0	136	28	23	14	33	1.94
228853--229229	52	7.2	52	79	4	321	25	24	15	34	1.95
228881--229229	158	2.2	155	81	4	398	24	24	15	35	1.94
230441--230484	20	2.1	21	83	4	54	43	6	18	31	1.76
231877--232177	154	2.0	154	89	0	458	33	16	20	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234336--234386	14	3.8	13	80	12	59	49	0	0	50	1.00
234653--234731	39	2.0	39	97	0	149	22	10	8	58	1.58
235768--235794	13	2.1	13	100	0	54	59	0	0	40	0.98
237511--237559	25	1.9	26	87	4	73	46	0	2	51	1.12
239111--239152	6	7.2	6	94	5	77	66	0	16	16	1.25
239115--239151	17	2.2	17	100	0	74	67	0	16	16	1.23
246221--246268	16	3.0	16	82	8	62	50	2	0	47	1.12
251878--251906	13	2.1	14	93	6	51	44	0	0	55	0.99
253956--253980	2	12.5	2	100	0	50	0	52	0	48	1.00
254102--254137	3	12.0	3	100	0	72	33	0	0	66	0.92
257680--257725	21	2.1	22	84	4	58	19	30	19	30	1.97
260652--260832	5	36.4	5	67	19	60	60	0	2	36	1.13
260652--260728	33	2.3	34	80	8	88	63	0	2	33	1.08
260706--260769	16	4.4	15	77	16	64	53	1	1	43	1.19
260671--260808	21	7.1	19	67	21	65	59	0	1	38	1.12
260671--260769	29	3.3	29	79	10	87	57	1	2	39	1.17
260783--260834	21	2.5	22	78	12	56	65	0	1	32	1.04
261251--261399	50	3.0	50	83	0	199	34	17	18	30	1.94
266083--266133	15	3.4	15	81	5	59	52	1	1	43	1.23
266232--266263	2	16.0	2	100	0	64	50	0	0	50	1.00
269634--269694	22	2.8	22	87	5	88	49	1	0	49	1.10
269671--269701	15	2.1	14	94	5	53	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269906--269940	13	2.8	13	91	4	54	42	0	0	57	0.99
270686--270736	14	3.6	15	80	17	56	64	0	0	35	0.94
271170--271217	25	1.9	25	87	8	71	45	0	0	54	0.99
271175--271227	25	2.1	25	82	6	63	43	1	0	54	1.11
271224--271299	36	2.0	38	85	12	104	59	0	1	39	1.06
274951--274982	16	2.1	15	94	5	55	43	0	0	56	0.99
275818--276035	110	2.0	109	94	4	386	49	19	3	27	1.63
279486--279523	2	19.0	2	88	0	58	47	47	0	5	1.24
280280--280352	37	2.0	36	81	7	85	56	0	1	42	1.08
281479--281506	2	14.0	2	100	0	56	50	50	0	0	1.00
282261--282304	23	1.9	23	81	9	54	50	4	0	45	1.22
284845--284884	12	3.5	11	86	10	53	52	2	0	45	1.14
287244--287278	18	2.0	18	88	5	54	31	5	2	60	1.35
288179--288224	2	23.0	2	86	0	65	45	2	2	50	1.26
291552--291587	2	18.0	2	94	0	63	50	2	0	47	1.15
293572--293651	29	2.8	27	83	12	97	41	0	0	58	0.98
293582--293633	22	2.4	21	75	6	59	36	0	0	63	0.95
293572--293660	30	3.0	29	78	15	94	40	0	1	58	1.05
294372--294421	17	2.9	18	83	16	54	68	0	0	32	0.90
294372--294439	18	3.9	17	78	19	70	64	0	1	33	1.02
294373--294439	34	2.0	34	82	11	84	65	0	1	32	1.02
294789--294814	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295016--295040	2	12.5	2	100	0	50	52	0	0	48	1.00
295690--295739	20	2.4	21	83	6	66	46	0	0	54	1.00
295700--295743	21	2.1	21	88	12	65	38	0	0	61	0.96
295715--295785	36	2.0	36	83	10	92	49	1	0	49	1.09
298028--298060	15	2.2	15	94	0	57	33	9	36	21	1.85
308376--308518	70	2.0	70	95	2	261	55	13	12	17	1.68
310904--310940	2	18.5	2	100	0	74	51	0	0	48	1.00
311131--311178	22	2.2	22	85	7	62	56	4	0	39	1.19
311259--311302	17	2.5	17	81	7	52	40	0	2	56	1.11
311506--311601	40	2.6	36	83	16	133	26	2	11	60	1.42
311508--311590	40	2.1	40	100	0	166	24	2	12	61	1.42
312464--312600	71	1.9	70	89	1	211	54	5	2	38	1.35
314354--314422	17	4.0	17	78	15	70	65	1	1	31	1.11
314324--314384	11	5.5	11	82	7	70	65	3	0	31	1.09
314324--314384	22	2.8	22	85	9	88	65	3	0	31	1.09
314460--314514	15	3.8	15	78	4	51	0	34	1	63	1.05
315113--315178	22	3.0	23	82	8	68	37	0	0	62	0.96
315122--315160	14	2.6	15	88	8	53	35	0	0	64	0.94
319905--319947	18	2.4	18	100	0	86	41	0	9	48	1.35
324182--324221	2	19.5	2	89	5	62	50	2	2	45	1.28
324718--324767	23	2.1	23	85	7	64	50	0	0	50	1.00
330877--330929	26	2.0	26	85	0	70	43	3	18	33	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
332414--332489	29	2.6	28	72	11	73	52	0	1	46	1.08
333585--333626	12	3.6	12	78	15	52	40	0	0	59	0.97
333591--333650	22	2.8	21	85	12	77	41	0	0	58	0.98
333594--333657	22	2.9	22	80	15	69	45	0	0	54	0.99
338139--338171	16	2.0	17	88	5	50	0	18	6	75	1.00
338396--338426	12	2.5	13	89	10	55	74	0	9	16	1.07
340722--340772	20	2.6	19	73	11	50	41	1	3	52	1.31
342154--342193	20	2.0	20	85	9	55	50	0	0	50	1.00
342953--343026	18	3.7	21	80	12	68	50	1	0	48	1.09
342978--343029	17	3.2	16	76	12	54	50	0	0	50	1.00
343369--343422	23	2.2	25	83	6	67	37	0	1	61	1.07
343388--343449	22	2.7	23	80	5	63	40	0	0	59	0.97
343627--343667	16	2.5	16	88	4	55	58	0	0	41	0.98
343636--343689	20	2.7	20	80	11	65	51	0	0	48	1.00
343628--343679	15	3.2	16	81	8	61	53	0	0	46	1.00
343695--343726	16	1.9	17	93	6	57	68	0	0	31	0.90
344873--344908	16	2.2	17	90	5	56	2	11	0	86	0.68
349956--349993	16	2.3	16	90	4	58	44	0	0	55	0.99
352756--352792	2	18.5	2	88	0	56	43	0	5	51	1.24
352758--352792	12	2.9	12	100	0	70	42	0	5	51	1.25
355314--355345	2	16.0	2	100	0	64	50	0	0	50	1.00
355452--355480	3	9.7	3	100	0	58	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370041--370083	2	21.5	2	100	0	86	48	0	0	51	1.00
373545--373601	28	2.0	28	100	0	114	36	24	7	31	1.82
376809--376894	5	16.2	5	74	19	68	61	0	0	38	0.96
376809--376896	17	5.5	17	75	18	82	61	0	0	38	0.96
376805--376964	26	6.1	27	69	19	81	56	0	0	42	1.03
376813--376893	22	3.9	21	80	12	78	61	0	0	38	0.96
378289--378337	25	1.9	26	88	12	75	14	12	2	71	1.23
378505--378566	22	2.7	23	80	12	65	40	1	0	58	1.08
378787--378856	33	2.2	33	82	7	81	51	0	0	48	1.00
379050--379134	29	2.8	31	92	7	147	54	7	7	31	1.54

Tables:   1   2   3   4   5