genome.fa.s137.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold137
Parameters: 2 7 7 80 10 50 1000
Length:  675198

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
519020--519868	49	17.9	49	81	10	991	30	18	26	24	1.98
519889--520485	34	17.4	36	73	19	342	32	12	34	21	1.91
519909--520095	71	2.7	70	92	3	297	35	12	33	18	1.89
520018--520190	87	2.0	88	91	3	287	34	13	31	20	1.91
520106--520513	62	6.3	67	86	7	308	31	13	33	22	1.92
520104--520487	95	4.0	95	76	15	330	31	13	33	21	1.91
520176--520485	62	5.0	61	88	5	338	30	13	34	22	1.92
520242--520485	123	2.0	123	85	4	332	29	13	34	22	1.93
520489--520574	30	2.8	30	92	5	138	26	19	27	25	1.99
521530--521583	23	2.2	25	90	6	85	0	9	7	83	0.82
521546--521583	17	2.2	17	90	4	58	0	5	7	86	0.69
528702--528829	52	2.5	52	94	3	224	30	17	17	33	1.94
528838--528862	13	1.9	13	100	0	50	36	16	16	32	1.90
528903--528969	33	2.0	33	88	0	98	40	13	11	34	1.81
528925--528949	13	1.9	13	100	0	50	32	16	16	36	1.90
539852--539885	2	17.0	2	100	0	68	50	0	0	50	1.00
542550--542595	15	3.4	14	80	11	51	36	2	0	60	1.09
542558--542604	15	3.2	15	87	3	69	38	2	0	59	1.09
543035--543069	17	2.1	17	100	0	70	22	11	20	45	1.82
543035--543080	17	2.7	17	89	0	56	26	8	19	45	1.79
544074--544112	2	19.5	2	100	0	78	48	0	0	51	1.00
544809--544851	22	2.0	22	95	0	77	34	20	11	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545320--545376	3	19.3	3	96	3	107	33	0	0	66	0.92
545524--545604	30	2.8	28	85	11	92	44	2	1	51	1.22
546267--546299	17	1.9	17	93	0	57	33	0	0	66	0.92
553741--553785	20	2.2	20	96	0	81	55	11	4	28	1.54
554438--554610	82	2.1	83	86	5	244	36	18	14	30	1.91
556474--556523	16	2.9	16	78	21	57	66	0	0	34	0.92
556426--556527	34	3.0	35	72	11	104	58	0	0	41	0.98
556470--556544	21	3.6	22	68	23	54	60	0	0	40	0.97
558328--558373	22	2.1	22	91	0	74	50	0	0	50	1.00
559073--559122	14	3.4	14	86	8	64	54	2	2	42	1.23
559200--559259	31	1.9	31	93	0	102	38	1	10	50	1.46
559427--559474	14	3.5	13	81	13	51	27	0	0	72	0.84
559433--559477	20	2.3	20	81	11	58	33	0	0	66	0.92
560218--560266	20	2.5	20	76	3	55	48	8	0	42	1.32
561386--561431	2	23.0	2	81	0	56	43	2	6	47	1.41
561382--561432	18	2.8	18	84	0	66	43	3	7	45	1.51
561378--561421	22	2.0	22	95	0	79	45	6	4	43	1.51
561859--561888	2	15.0	2	92	0	51	46	0	3	50	1.18
563845--563889	24	2.0	22	91	8	72	26	15	17	40	1.90
566203--566239	3	12.0	3	88	5	56	62	2	35	0	1.10
567451--567502	16	3.4	16	80	15	58	61	0	0	38	0.96
567448--567543	10	8.8	11	69	21	51	57	1	1	40	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
567446--567562	58	2.1	56	82	12	141	56	1	0	41	1.15
572853--573116	130	2.0	134	86	8	371	39	11	18	30	1.86
576722--576754	2	17.0	2	90	6	50	54	0	45	0	0.99
577600--577734	67	2.0	68	94	1	236	46	0	6	46	1.29
577795--577845	19	2.7	19	79	11	59	64	0	0	35	0.94
577823--577885	22	3.0	22	81	4	76	55	0	0	44	0.99
578765--578807	21	2.0	21	82	8	52	6	18	44	30	1.76
579130--579192	33	1.9	32	87	6	90	63	6	0	30	1.19
579278--579318	15	2.8	15	81	3	57	53	4	0	41	1.22
579994--580050	17	2.9	20	76	23	59	59	0	3	36	1.14
580345--580398	19	2.9	19	78	13	67	57	1	0	40	1.09
581246--581273	11	2.5	11	100	0	56	42	0	0	57	0.99
581804--581928	59	2.1	59	83	2	153	44	5	14	36	1.69
581804--581887	30	2.9	29	72	1	87	44	5	14	35	1.69
582341--582449	37	2.9	37	94	1	182	43	7	10	39	1.66
583366--583437	29	2.4	31	74	4	76	41	2	16	38	1.63
583385--583444	29	2.1	29	80	0	66	45	5	13	36	1.65
590489--590552	32	2.0	32	96	0	119	40	4	23	31	1.75
595359--595392	2	17.0	2	100	0	68	0	50	0	50	1.00
595478--595506	14	2.1	14	100	0	58	0	41	0	58	0.98
595919--595999	19	4.4	17	74	20	65	54	0	2	43	1.13
595924--595993	38	1.9	35	86	13	97	54	0	2	42	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
596273--596306	2	17.0	2	100	0	68	50	0	0	50	1.00
597344--597374	14	2.2	14	100	0	62	45	29	0	25	1.54
598386--598428	19	2.3	18	81	14	52	34	0	2	62	1.08
600007--600063	29	2.0	29	82	6	71	45	0	0	54	0.99
601357--601418	5	12.8	5	74	17	51	33	1	0	64	1.03
601357--601399	11	3.7	11	81	6	50	37	0	0	62	0.95
601360--601419	22	2.7	23	85	7	81	33	1	0	65	1.03
601370--601422	17	3.1	17	76	15	56	30	1	0	67	1.01
601352--601416	30	2.2	29	83	10	78	32	1	0	66	1.01
602371--602395	2	12.5	2	100	0	50	52	0	0	48	1.00
604729--604824	27	3.4	28	76	15	74	37	3	0	59	1.13
604820--604856	18	2.0	19	89	5	58	32	0	0	67	0.91
613269--613298	14	2.1	14	93	0	51	90	0	10	0	0.47
614220--614285	26	2.4	26	85	7	78	46	3	0	50	1.16
614237--614296	26	2.4	25	86	10	79	46	1	0	51	1.10
614439--614491	23	2.3	22	81	9	61	49	0	0	50	1.00
614513--614587	36	2.0	36	82	5	87	53	0	0	46	1.00
614576--614620	14	3.2	13	81	12	54	71	2	0	26	0.98
614913--614950	20	1.9	20	89	10	60	47	0	5	47	1.24
614963--615015	20	2.5	21	73	14	56	56	0	0	43	0.99
615460--615503	6	7.3	6	92	0	61	15	11	34	38	1.84
618169--618202	16	2.1	17	94	5	61	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618498--618648	8	19.2	8	65	19	52	42	1	0	54	1.16
618523--618570	18	2.8	17	84	12	62	45	0	0	54	0.99
618492--618589	48	2.0	50	82	7	121	41	2	0	56	1.11
618545--618614	32	2.1	34	86	5	99	45	2	0	51	1.16
618848--618880	17	2.0	16	94	5	57	51	0	0	48	1.00
620280--620317	19	2.0	20	85	15	53	52	2	0	44	1.14
620530--620561	8	4.1	8	96	4	57	65	0	0	34	0.93
622787--622848	24	2.6	25	77	12	67	56	6	1	35	1.35
622787--622821	14	2.4	15	90	4	54	54	5	0	40	1.24
623816--623876	25	2.3	26	84	13	81	44	0	0	55	0.99
623816--623862	24	2.0	24	83	8	60	44	0	0	55	0.99
624769--625052	142	2.0	142	100	0	568	32	13	14	40	1.84
628037--628090	18	3.2	17	76	7	56	50	0	0	50	1.00
628991--629043	16	3.2	17	76	7	56	54	1	0	43	1.11
629242--629311	17	4.1	16	71	15	52	57	0	0	42	0.99
629245--629316	23	3.3	22	75	16	62	58	0	0	41	0.98
629687--629735	18	2.7	19	75	15	50	61	0	0	38	0.96
629746--629785	11	3.6	11	83	12	55	67	0	0	32	0.91
629687--629776	16	5.8	17	70	21	65	63	0	0	36	0.95
630467--630508	3	14.0	3	100	0	84	33	0	0	66	0.92
633321--633397	3	25.7	3	75	5	66	5	35	1	58	1.29
637820--637858	12	3.2	12	79	13	53	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
638438--638471	17	1.9	18	88	5	52	35	5	5	52	1.50
639621--639646	12	2.2	12	100	0	52	15	0	0	84	0.62
639887--639930	24	1.9	23	82	17	56	36	4	2	56	1.32
640260--640315	27	2.0	30	83	16	75	51	1	5	41	1.35
640356--640401	24	2.0	23	84	12	60	71	0	2	26	0.97
640827--640891	20	3.5	17	75	19	58	55	0	0	44	0.99
641339--641409	27	2.6	27	86	6	90	46	22	7	23	1.76
645883--645959	28	2.8	27	86	5	93	46	23	6	23	1.75
648424--648470	16	2.9	16	75	15	51	40	0	0	59	0.97
648484--648528	18	2.4	18	85	7	54	60	6	0	33	1.23

Tables:   1   2   3   4   5