genome.fa.s137.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold137
Parameters: 2 7 7 80 10 50 1000
Length:  675198

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379310--379373	19	3.4	18	77	16	60	56	1	0	42	1.09
379865--379912	23	2.2	23	85	7	64	68	0	0	31	0.90
379958--380026	30	2.3	29	83	9	86	30	0	2	66	1.06
380314--380359	22	2.1	22	84	8	58	36	2	0	60	1.09
381052--381145	32	2.8	33	76	16	104	51	1	0	47	1.07
381439--381496	26	2.1	28	87	6	84	48	0	0	51	1.00
381430--381528	30	3.4	30	76	13	80	51	1	0	47	1.07
381754--381793	19	2.0	20	90	4	64	37	0	5	57	1.21
382080--382151	38	1.9	37	83	8	92	52	2	33	11	1.51
383619--383665	24	2.0	24	91	0	76	19	12	2	65	1.35
383950--383987	2	19.0	2	88	0	58	50	5	0	44	1.24
384179--384247	8	8.6	8	90	0	75	60	2	0	36	1.11
384216--384244	2	14.5	2	100	0	58	51	0	0	48	1.00
384704--384741	13	3.1	13	81	11	53	39	2	0	57	1.12
386040--386104	30	2.2	30	83	5	80	43	6	4	46	1.49
386678--386752	20	3.8	20	80	0	96	33	13	12	41	1.81
386678--386755	40	2.0	39	89	2	120	33	12	12	41	1.82
400502--400601	28	3.6	28	83	6	123	25	20	33	22	1.97
400589--400811	105	2.1	103	83	3	268	33	11	25	30	1.91
400589--400975	51	7.4	51	74	12	300	31	12	25	30	1.92
400794--400869	27	2.8	28	91	2	118	21	19	32	26	1.97
403322--403348	13	2.1	13	100	0	54	40	14	14	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403388--403455	19	3.9	19	78	21	94	39	14	11	33	1.83
403410--403434	13	1.9	13	100	0	50	32	16	16	36	1.90
403391--403453	32	2.0	32	100	0	126	38	15	12	33	1.86
403491--403567	21	3.7	21	89	3	111	35	16	12	35	1.88
404331--405459	55	19.9	55	84	7	1190	23	20	29	26	1.99
404331--405485	223	5.1	223	86	6	1377	23	20	29	26	1.99
404331--405459	278	4.0	277	87	5	1503	23	20	29	26	1.99
406471--406510	18	2.2	18	86	8	55	0	5	7	87	0.66
406481--406511	13	2.4	13	94	0	53	0	3	9	87	0.66
409728--409804	20	3.9	19	76	6	73	33	12	12	40	1.82
409728--409805	40	2.0	39	84	2	102	33	12	14	39	1.84
422516--422582	26	2.5	28	87	7	102	25	19	34	20	1.96
422602--422727	51	2.4	51	75	17	134	32	9	26	31	1.88
425251--425315	33	2.0	33	84	0	85	43	16	15	24	1.87
427798--427844	21	2.2	21	85	7	60	46	23	23	6	1.75
433057--433095	1	39.0	1	84	0	51	92	2	5	0	0.46
433058--433096	20	2.0	19	90	5	60	89	2	7	0	0.56
438912--439074	45	3.6	45	67	14	134	39	21	18	20	1.93
444635--444659	13	1.9	13	100	0	50	36	16	16	32	1.90
444726--444750	13	1.9	13	100	0	50	32	16	16	36	1.90
444759--444879	52	2.3	52	95	0	215	34	18	18	28	1.94
451769--451804	1	36.0	1	94	0	63	97	2	0	0	0.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452048--452090	13	3.2	13	90	6	59	86	4	9	0	0.71
453087--453211	31	4.1	30	80	12	130	24	30	17	28	1.97
453088--453181	32	3.0	30	80	13	109	23	31	18	26	1.97
453190--453397	35	5.9	34	84	9	242	20	33	11	35	1.88
453190--453392	70	2.9	69	89	5	277	20	33	11	34	1.89
453394--453491	32	3.1	31	91	5	160	27	37	18	16	1.92
453189--453442	105	2.4	102	83	7	262	22	34	12	31	1.91
453399--453491	33	2.9	32	93	6	161	29	36	19	15	1.92
453496--454525	49	20.7	49	85	4	1345	24	26	17	31	1.97
453496--454555	101	10.6	101	93	3	1627	24	26	16	31	1.97
454391--454459	22	3.2	22	63	19	54	26	26	17	30	1.97
455421--455445	13	1.9	13	100	0	50	36	16	16	32	1.90
455512--455536	13	1.9	13	100	0	50	32	16	16	36	1.90
455545--455665	52	2.3	52	95	0	215	34	18	18	28	1.94
459707--459772	28	2.4	28	92	0	105	27	24	28	19	1.99
459699--459803	28	3.7	29	82	7	103	26	20	31	21	1.98
459786--460008	52	4.3	51	81	6	223	33	11	24	30	1.91
460023--460148	51	2.4	50	83	7	153	30	11	23	34	1.91
459888--460141	133	1.9	131	81	7	309	31	13	24	29	1.94
462513--462538	13	2.0	13	100	0	52	38	15	15	30	1.88
462492--462558	33	2.0	33	88	0	98	43	16	14	25	1.86
462578--462645	19	3.9	18	73	23	74	38	13	11	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
462581--462643	32	2.0	32	93	0	108	36	14	12	36	1.84
463980--464039	19	3.2	17	84	15	75	88	10	1	0	0.59
463981--464051	31	2.2	34	85	12	96	85	9	2	1	0.75
463980--464051	14	5.5	13	80	14	76	86	9	2	1	0.74
463979--464051	11	6.8	11	74	14	55	84	10	2	1	0.78
463980--464039	1	60.0	1	76	0	57	88	10	1	0	0.59
463985--464039	24	2.2	24	84	15	69	87	10	1	0	0.63
465266--466250	28	34.5	29	82	8	912	26	29	18	24	1.98
465267--466224	145	6.7	142	84	6	985	26	29	18	24	1.98
466854--466931	40	2.0	39	87	2	111	32	12	14	41	1.83
466854--466930	20	3.9	19	75	8	73	32	12	12	41	1.82
473469--473517	2	24.5	2	100	0	98	51	0	0	48	1.00
473855--473881	2	13.5	2	100	0	54	48	0	0	51	1.00
473902--473944	3	14.0	3	90	4	68	69	0	30	0	0.88
474292--474338	23	2.1	22	84	4	58	44	8	8	38	1.65
478555--478699	52	2.8	52	80	4	159	31	15	26	26	1.96
478635--478737	52	2.0	52	81	7	120	33	15	24	27	1.95
481998--482022	13	1.9	13	100	0	50	4	24	0	72	1.02
485284--485337	25	2.3	21	79	17	54	61	0	1	37	1.07
493003--493038	2	18.0	2	100	0	72	50	0	0	50	1.00
494155--494229	22	3.2	22	71	20	62	45	0	1	53	1.08
494161--494232	21	3.1	21	73	21	63	43	0	1	55	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
496016--496131	57	2.0	57	98	0	223	37	21	19	21	1.95
496660--496728	16	4.3	16	75	14	61	56	4	1	37	1.28
496687--496725	2	19.5	2	83	0	51	51	2	0	46	1.14
497168--497224	25	2.3	25	76	11	64	63	0	0	36	0.95
497184--497248	19	3.4	19	70	21	55	67	0	0	32	0.91
498898--498932	2	17.5	2	100	0	70	48	0	0	51	1.00
499635--499670	2	18.0	2	100	0	72	50	0	0	50	1.00
500632--500681	17	2.7	18	75	21	50	46	0	2	52	1.12
502153--502189	11	3.4	11	88	0	56	35	0	0	64	0.94
502239--502269	15	2.0	16	93	6	55	51	0	0	48	1.00
505541--505603	22	2.7	24	78	9	76	73	3	19	4	1.15
507034--507068	2	17.5	2	100	0	70	48	0	0	51	1.00
507741--507777	11	3.2	12	88	11	51	59	8	8	24	1.53
507847--507903	11	4.9	11	76	8	51	82	5	12	0	0.82
507865--507904	15	2.7	15	82	17	57	85	5	10	0	0.75
509095--509139	22	2.0	22	91	0	72	26	13	13	46	1.80
510000--510065	30	2.2	30	86	2	98	62	3	1	33	1.20
513535--513663	52	2.5	52	93	0	231	28	18	18	34	1.95
513672--513696	13	1.9	13	100	0	50	36	16	16	32	1.90
513741--513953	32	6.7	32	97	0	399	35	18	11	34	1.87
517833--517960	52	2.5	52	94	3	224	30	17	17	33	1.94
517969--517993	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
518034--518100	33	2.0	33	88	0	98	40	13	11	34	1.81
518056--518080	13	1.9	13	100	0	50	32	16	16	36	1.90
519073--519819	43	16.1	43	80	13	783	30	18	26	24	1.98
519020--519873	92	9.1	92	86	8	1050	30	17	26	24	1.97
519468--519535	22	3.1	22	62	26	54	30	20	25	23	1.98
519448--519514	21	3.1	21	62	26	50	26	19	28	25	1.99
519020--519873	235	3.6	233	87	7	1176	30	17	26	24	1.97
519591--519658	21	3.2	21	62	25	52	27	17	29	25	1.97
519703--519770	22	3.1	22	62	26	54	30	20	25	23	1.98
519683--519749	21	3.1	21	62	26	50	26	19	28	25	1.99

Tables:   1   2   3   4   5