genome.fa.s138.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold138
Parameters: 2 7 7 80 10 50 1000
Length:  1735418

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1296 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1564607--1564631	13	1.9	13	100	0	50	32	16	16	36	1.90
1564619--1564671	21	2.5	22	82	11	67	39	16	15	28	1.89
1564712--1564779	33	2.1	32	89	8	102	35	13	16	35	1.87
1574647--1574693	21	2.2	21	84	0	58	36	14	14	34	1.88
1580643--1580859	79	2.7	78	80	10	219	33	12	24	28	1.93
1580799--1580913	51	2.3	51	85	0	158	32	12	25	30	1.92
1580896--1580959	28	2.3	28	80	0	74	28	18	31	21	1.97
1580917--1580972	28	2.0	28	92	0	94	30	19	30	19	1.97
1581054--1581178	51	2.4	52	74	4	128	34	9	24	31	1.88
1583487--1583541	20	2.8	20	88	5	76	41	12	16	29	1.85
1598489--1598534	20	2.3	21	82	17	62	56	6	8	28	1.54
1599430--1599476	22	2.2	20	82	17	60	2	19	0	78	0.85
1599855--1599914	21	2.9	21	82	7	70	40	11	13	35	1.81
1602550--1602603	20	2.7	20	82	0	63	37	11	16	35	1.84
1606933--1607044	50	2.2	50	92	3	181	28	18	13	39	1.89
1609745--1609817	20	3.6	20	81	3	101	36	13	17	31	1.89
1609762--1609838	21	3.7	21	77	6	86	42	11	16	28	1.84
1609745--1609838	41	2.3	41	94	3	163	39	12	18	29	1.88
1609877--1609902	13	2.0	13	100	0	52	38	15	15	30	1.88
1609859--1609922	32	2.0	33	87	3	94	42	14	15	28	1.86
1613964--1613994	15	2.1	15	93	0	53	48	16	22	12	1.80
1616073--1616111	13	3.0	13	96	0	69	30	17	15	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1618553--1618624	20	3.6	20	79	5	92	37	13	16	31	1.88
1618569--1618645	21	3.7	21	77	6	86	42	11	16	28	1.84
1618553--1618645	41	2.3	41	92	5	154	39	12	17	30	1.87
1618684--1618709	13	2.0	13	100	0	52	38	15	15	30	1.88
1618666--1618729	32	2.0	33	87	3	94	42	14	15	28	1.86
1619455--1619602	78	1.9	78	87	2	217	27	26	13	32	1.94
1621659--1621696	4	9.5	4	88	0	58	21	2	2	73	1.07
1621661--1621701	16	2.5	16	88	4	55	19	2	4	73	1.13
1631932--1631975	1	44.0	1	81	0	52	90	2	2	4	0.58
1631939--1631990	10	5.1	10	84	9	61	86	0	9	3	0.69
1631932--1631987	18	3.2	18	87	2	69	87	1	7	3	0.72
1631957--1631989	12	2.8	12	90	4	50	84	0	15	0	0.61
1632542--1632610	31	2.2	31	94	0	120	21	13	27	37	1.90
1632983--1633680	61	11.4	61	85	3	877	26	26	18	29	1.98
1633703--1633845	41	3.5	41	87	0	196	22	22	15	39	1.91
1634584--1634636	20	2.7	20	75	0	61	33	16	7	41	1.77
1636989--1637186	79	2.5	79	84	0	252	27	24	14	33	1.94
1637129--1637237	51	2.1	51	83	6	132	26	22	15	34	1.94
1637010--1637396	210	1.9	208	83	3	508	26	25	14	32	1.95
1637179--1637528	79	4.4	78	80	6	348	28	25	13	32	1.94
1642458--1642490	13	2.4	14	85	15	50	42	15	15	27	1.86
1642465--1642490	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1642447--1642511	34	2.0	32	88	11	96	38	16	15	29	1.90
1644090--1644123	3	11.3	3	87	0	50	38	0	32	29	1.58
1648247--1648427	52	3.5	52	95	0	317	27	18	19	34	1.95
1648436--1648460	13	1.9	13	100	0	50	36	16	16	32	1.90
1654471--1655073	320	1.9	320	89	2	951	37	11	14	36	1.82
1655173--1655198	13	2.0	13	100	0	52	38	15	15	30	1.88
1657420--1657464	21	2.1	21	84	8	56	53	4	20	22	1.63
1659267--1659297	15	2.1	15	93	0	53	48	16	22	12	1.80
1661374--1661399	13	2.0	13	100	0	52	30	15	15	38	1.88
1666208--1666423	79	2.7	78	80	7	213	33	14	23	27	1.94
1666410--1666526	51	2.3	51	86	1	153	38	11	17	31	1.87
1666650--1666818	51	3.3	51	79	0	185	30	12	27	28	1.93
1669119--1669157	20	2.0	20	94	0	69	41	10	15	33	1.81
1669119--1669186	33	2.1	33	88	5	102	42	11	14	30	1.82
1669139--1669168	13	2.3	13	94	0	51	40	10	16	33	1.82
1671061--1671116	19	2.9	19	83	2	76	30	19	14	35	1.91
1677407--1677440	7	4.9	7	96	0	59	0	26	0	73	0.83
1678498--1678859	140	2.7	131	77	14	332	34	8	4	52	1.52
1678620--1678910	140	2.1	141	82	7	342	34	7	3	54	1.45
1679793--1679855	31	2.0	31	90	0	99	60	0	1	38	1.07
1680146--1680207	18	3.8	16	76	14	56	64	0	1	33	1.03
1680146--1680207	16	3.8	15	75	21	54	64	0	1	33	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1683562--1683607	21	2.1	22	92	4	76	32	10	23	32	1.90
1684181--1684207	4	6.8	4	100	0	54	77	0	0	22	0.76
1685277--1685302	13	2.0	13	100	0	52	30	15	15	38	1.88
1686001--1686044	21	2.1	21	83	8	54	25	31	4	38	1.76
1687849--1687874	13	2.0	13	100	0	52	38	15	15	30	1.88
1689944--1689974	15	2.1	15	93	0	53	12	22	16	48	1.80
1691776--1691820	21	2.1	21	84	8	56	22	20	4	53	1.63
1694038--1694063	13	2.0	13	100	0	52	30	15	15	38	1.88
1694893--1694942	25	2.0	25	84	7	66	54	0	6	40	1.25
1696859--1696911	19	2.7	20	88	2	72	30	16	18	33	1.94
1696862--1696911	20	2.6	19	87	3	64	32	18	18	32	1.94
1696941--1697003	33	1.9	33	87	6	92	31	12	20	34	1.90
1703200--1703240	21	1.9	21	85	5	55	26	19	0	53	1.45
1708768--1708823	25	2.3	25	81	6	62	26	3	0	69	1.04
1709941--1709969	12	2.3	13	94	5	51	31	0	6	62	1.22
1714291--1714354	30	2.1	31	88	2	94	28	12	10	48	1.75
1718514--1718612	32	3.0	33	91	2	155	41	14	12	32	1.82
1718536--1718592	13	3.9	13	76	24	60	38	14	14	33	1.85
1718512--1718579	19	3.9	18	75	25	74	47	11	11	29	1.76
1719366--1719445	29	2.7	30	86	3	110	61	12	8	17	1.56
1721477--1721506	16	1.9	15	93	6	51	13	3	3	80	0.97
1722701--1722734	17	2.1	17	88	5	52	5	8	35	50	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1722948--1723236	138	2.1	138	96	0	535	14	24	13	47	1.80
1724137--1726606	125	19.6	125	78	4	1848	36	18	29	15	1.92
1724137--1726609	42	58.8	42	80	2	1716	36	18	29	15	1.92
1724137--1726617	84	29.5	84	80	3	2057	36	18	29	15	1.91
1728839--1728864	13	2.0	13	100	0	52	30	15	15	38	1.88
1728819--1728882	32	2.0	33	90	3	103	26	14	15	43	1.85
1730933--1730975	20	2.1	20	82	4	50	9	27	44	18	1.80
1731407--1731444	13	2.9	13	96	0	67	31	15	18	34	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!