Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold163
Parameters: 2 7 7 80 10 50 1000
Length:  1788591

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1505 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1701582--1701632
27
1.9
27
88
4
77
35
0
13
50
1.42
1703378--1703423
22
2.1
22
95
0
83
36
2
0
60
1.09
1703544--1703577
14
2.4
14
95
5
59
29
11
2
55
1.50
1703685--1703711
13
2.1
13
100
0
54
44
22
0
33
1.53
1706411--1706463
21
2.6
19
82
11
61
39
1
0
58
1.09
1716478--1716536
20
3.1
19
85
7
75
38
15
11
33
1.84
1716499--1716536
20
1.9
20
100
0
76
39
13
15
31
1.86
1723448--1723493
20
2.3
20
92
0
74
36
28
6
28
1.82
1724694--1724735
22
1.9
22
90
0
66
40
4
33
21
1.74
1725327--1725351
13
1.9
13
100
0
50
36
16
16
32
1.90
1725306--1725370
32
2.0
32
90
3
103
30
15
13
40
1.86
1725336--1725394
20
3.0
20
82
7
77
33
15
16
33
1.91
1726934--1726987
25
2.2
25
96
0
99
46
1
7
44
1.42
1729592--1729655
26
2.5
24
76
16
65
46
1
7
43
1.42
1731206--1731230
2
12.5
2
100
0
50
52
0
0
48
1.00
1739416--1739461
16
2.9
16
90
6
67
41
8
4
45
1.55
1741121--1741153
15
2.3
15
94
5
59
15
0
0
84
0.61
1741568--1741596
3
9.7
3
100
0
58
65
0
0
34
0.93
1742180--1742204
2
12.5
2
100
0
50
48
0
0
52
1.00
1748394--1748427
8
4.4
8
85
7
52
47
0
0
52
1.00
1748403--1748464
7
8.0
7
76
16
52
41
0
0
58
0.98
1748405--1748454
26
2.0
25
84
11
66
44
0
0
56
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1748368--1748474
15
6.8
16
73
17
73
42
0
0
56
1.05
1748406--1748473
9
8.2
9
79
15
60
41
0
0
58
0.98
1748432--1748489
21
2.6
23
84
13
77
36
0
0
63
0.94
1748439--1748485
14
3.4
15
75
19
57
34
0
0
65
0.93
1748830--1748866
16
2.3
17
86
13
60
32
0
0
67
0.91
1753107--1753149
2
21.5
2
100
0
86
48
0
0
51
1.00
1755278--1755321
21
2.0
21
86
4
61
50
0
0
50
1.00
1755281--1755324
22
2.0
23
86
4
63
50
0
0
50
1.00
1755428--1755471
20
2.3
20
84
7
56
52
2
4
40
1.34
1755428--1755484
19
3.0
20
82
7
57
50
1
3
43
1.29
1755494--1755551
26
2.2
26
79
11
66
58
3
1
36
1.25
1755626--1755683
12
4.8
12
74
4
53
48
3
0
48
1.18
1755626--1755733
13
8.3
13
66
15
53
48
3
0
47
1.26
1756053--1756109
21
2.7
21
77
2
60
31
0
0
68
0.90
1756319--1756362
22
2.0
23
86
4
63
47
2
0
50
1.13
1757902--1757956
24
2.3
23
81
9
67
36
5
18
40
1.74
1762373--1762427
24
2.3
23
81
9
67
36
5
18
40
1.74
1769052--1769094
21
2.0
21
82
8
52
44
0
2
53
1.13
1770106--1770131
12
2.2
12
100
0
52
19
15
7
57
1.62
1770161--1770222
22
2.8
22
73
20
58
46
1
0
51
1.10
1770747--1770821
13
5.6
13
76
7
71
49
4
0
46
1.20
1770751--1770821
27
2.6
27
78
12
74
49
4
0
46
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1773874--1773903
15
2.0
15
93
0
51
66
3
0
30
1.07
1775509--1775548
20
2.0
20
85
9
55
75
2
0
22
0.93
1776864--1776892
2
15.0
2
92
7
51
0
48
0
51
1.00
1778120--1778183
30
2.2
30
83
5
78
45
1
6
46
1.37
1779147--1779191
23
2.0
23
86
0
63
51
0
0
48
1.00
1779334--1779376
22
1.9
23
81
13
54
34
0
4
60
1.17
1780725--1780754
2
15.0
2
92
0
51
46
0
3
50
1.18
1781193--1781229
14
2.7
14
91
4
58
35
0
5
59
1.20
1781325--1781367
11
4.1
11
79
8
54
30
6
0
62
1.21
1781813--1781849
19
1.9
19
88
0
56
45
0
2
51
1.15
1781942--1782001
20
3.0
19
85
9
75
35
0
11
53
1.38
1782047--1782342
77
3.9
75
70
9
224
37
2
9
50
1.48
1782283--1782380
20
4.9
20
85
4
110
34
2
10
53
1.47
1782350--1782546
77
2.6
76
79
4
218
33
5
15
45
1.68
1782412--1782457
20
2.2
20
84
3
56
26
0
17
56
1.41
1782424--1782480
20
2.6
21
81
13
62
33
0
15
50
1.44
1782677--1782740
20
3.1
21
84
6
71
32
1
12
53
1.48
1782677--1782751
20
3.7
20
82
8
66
33
2
13
50
1.55
1783039--1783157
54
2.2
55
79
10
131
31
1
11
54
1.46
1783202--1783280
30
2.5
31
78
15
90
34
2
12
50
1.54
1784450--1784489
17
2.4
17
82
0
53
45
0
52
2
1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!