genome.fa.s163.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold163
Parameters: 2 7 7 80 10 50 1000
Length:  1788591

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  7  of  13  ( 1505 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
710737--710843	23	5.0	21	70	11	74	40	0	0	58	1.04
710788--710869	32	2.9	27	77	19	94	47	0	0	52	1.00
710802--710852	15	3.1	18	71	28	58	49	0	0	50	1.00
711197--711244	20	2.4	21	81	18	59	62	0	0	37	0.95
711406--711434	3	9.7	3	100	0	58	65	0	0	34	0.93
711344--711418	36	2.1	36	100	0	150	42	2	8	46	1.47
711957--712012	20	2.8	19	80	20	62	41	1	10	46	1.49
713492--713585	32	2.9	32	83	0	125	44	25	12	17	1.84
713498--713599	16	6.4	16	68	0	69	43	26	13	16	1.85
713477--713599	32	3.8	33	78	6	110	42	26	13	17	1.86
714683--714732	16	3.1	16	74	25	52	38	32	18	12	1.87
714663--714705	22	2.0	22	100	0	86	37	34	18	9	1.83
716020--716067	23	2.1	23	88	0	69	35	2	2	60	1.20
716549--716586	19	2.0	20	89	5	60	55	0	0	44	0.99
720887--721144	126	2.0	126	100	0	516	23	26	22	27	1.99
722283--722329	17	2.7	18	78	12	53	42	0	0	57	0.98
722372--722451	5	15.2	5	79	11	72	60	1	0	38	1.05
722372--722451	11	7.6	10	78	12	72	60	1	0	38	1.05
722651--722677	2	13.5	2	100	0	54	0	48	0	51	1.00
722825--722891	29	2.3	28	78	14	73	43	0	0	56	0.99
722989--723046	5	12.2	5	75	15	52	41	1	1	55	1.20
722989--723043	9	5.9	9	79	8	56	40	1	1	56	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
722993--723057	14	4.5	14	75	12	60	43	1	1	53	1.19
722998--723066	29	2.3	30	85	12	88	42	2	1	53	1.24
722996--723074	20	4.3	19	70	23	62	41	2	1	54	1.22
723259--723300	22	1.9	22	90	0	66	33	2	2	61	1.21
723271--723305	17	2.1	17	89	10	54	42	0	0	57	0.99
723559--723610	2	26.0	2	100	0	104	50	0	0	50	1.00
725454--725490	2	18.5	2	94	0	65	48	0	0	51	1.00
725576--725652	16	4.8	17	79	6	65	57	2	1	38	1.21
725581--725648	33	2.1	32	91	2	109	60	2	1	35	1.21
726933--726978	22	2.0	22	83	8	56	39	6	2	52	1.40
727763--727822	16	3.7	16	84	2	75	63	0	0	36	0.95
727765--727820	24	2.3	25	87	3	87	66	0	0	33	0.92
727763--727811	8	6.1	8	81	9	55	63	0	0	36	0.95
729254--729304	12	3.9	12	78	16	57	43	5	11	39	1.66
729260--729316	27	2.1	27	90	0	87	40	5	19	35	1.74
729367--729399	9	3.7	9	95	0	57	45	18	33	3	1.65
734035--734085	12	3.9	12	78	16	57	43	5	11	39	1.66
734041--734097	27	2.1	27	90	0	87	40	5	19	35	1.74
734148--734180	9	3.7	9	95	0	57	45	18	33	3	1.65
737118--737151	2	17.0	2	100	0	68	50	0	0	50	1.00
738499--738543	20	2.2	20	84	7	56	33	8	11	46	1.70
745913--745971	17	3.3	18	72	11	59	47	1	0	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747571--747741	51	3.3	51	79	4	198	32	11	26	29	1.92
747724--747799	27	2.8	28	88	6	102	21	21	34	23	1.97
750268--750294	14	1.9	14	100	0	54	40	14	14	29	1.86
750314--750381	19	3.9	18	76	23	83	38	14	11	35	1.83
750336--750360	13	1.9	13	100	0	50	32	16	16	36	1.90
750317--750379	32	2.0	32	96	0	117	36	15	12	34	1.86
750437--750493	21	2.7	21	97	0	105	36	19	10	33	1.86
750504--750529	13	2.0	13	100	0	52	7	7	0	84	0.77
751090--752482	55	25.3	55	92	4	2164	20	20	30	29	1.97
752291--752435	26	5.3	26	65	15	96	20	18	31	28	1.97
753465--753498	13	2.5	13	95	4	59	0	2	11	85	0.71
917717--917778	24	2.6	25	77	12	58	50	0	3	46	1.17
917979--918014	16	2.2	17	90	9	58	69	0	2	27	1.02
918018--918059	11	3.6	12	78	15	52	47	0	0	52	1.00
918017--918075	24	2.5	23	86	13	84	44	0	0	55	0.99
918020--918089	24	3.1	22	81	16	74	40	0	0	60	0.97
918019--918100	9	9.7	9	71	19	52	40	0	0	59	0.97
918011--918119	38	2.8	38	80	14	109	41	1	0	56	1.10
918062--918099	12	3.1	12	88	7	58	34	0	0	65	0.93
918057--918096	21	2.0	20	95	5	71	35	0	0	65	0.93
918280--918322	21	2.0	22	86	13	63	51	0	6	41	1.29
918508--918569	22	2.8	22	76	13	65	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
919670--919700	16	1.9	16	93	0	53	74	3	0	22	0.96
920687--920800	61	1.9	59	83	3	147	42	3	1	52	1.28
920687--920770	29	2.8	30	72	5	80	40	4	2	52	1.35
921291--921342	26	1.9	26	84	7	68	48	0	3	48	1.20
923092--923127	17	2.2	16	95	5	63	50	0	0	50	1.00
924305--924382	40	2.0	37	85	14	104	62	0	0	37	0.95
924313--924371	29	2.0	30	83	3	75	64	0	0	35	0.94
924319--924397	12	5.5	15	71	21	55	58	0	0	41	0.98
925334--925368	18	1.9	18	88	0	52	48	8	0	42	1.33
925379--925422	16	2.8	16	92	0	70	56	0	0	43	0.99
926882--926922	19	2.1	20	86	4	57	70	0	0	29	0.87
928574--928652	38	2.1	38	80	4	88	54	6	1	37	1.34
929438--929469	16	2.0	16	93	0	55	50	3	0	46	1.17
929614--929715	29	3.5	28	75	11	82	47	0	7	45	1.32
933939--934005	20	3.3	21	70	19	70	67	0	0	32	0.91
934480--934526	23	2.0	23	87	0	67	46	0	0	53	1.00
934516--934582	21	3.4	19	80	10	71	55	0	0	44	0.99
934516--934567	21	2.6	21	90	6	81	55	0	0	44	0.99
934865--934928	31	2.1	31	82	11	78	53	0	1	45	1.10
945393--945460	31	2.2	31	82	10	77	7	25	20	47	1.76
945992--946036	24	2.0	24	83	12	60	24	0	8	66	1.20
945991--946104	29	3.9	29	73	17	74	24	0	6	68	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
946071--946120	19	2.6	19	80	0	55	18	2	2	78	0.95
947144--947200	15	3.9	14	79	9	51	75	7	0	17	1.02
947720--947763	16	2.8	16	82	6	54	45	20	27	6	1.76
947736--947828	16	5.9	15	72	9	60	47	20	22	9	1.79
947736--947827	32	2.9	32	80	6	114	46	20	22	9	1.80
947739--947879	48	2.9	48	78	10	146	48	17	23	9	1.77
947824--947878	16	3.4	16	79	0	56	50	14	25	9	1.72
957079--957127	22	2.2	23	82	13	59	40	10	6	42	1.63
958849--958889	21	1.9	22	90	5	66	36	7	0	56	1.27
959660--959723	29	2.3	26	79	12	65	45	3	4	46	1.39
959660--959723	27	2.3	27	81	10	67	45	3	4	46	1.39
962845--963135	159	1.8	158	81	5	363	24	16	21	37	1.93
965404--965534	32	4.1	32	90	1	192	45	2	6	45	1.42
971466--971496	2	16.0	2	93	6	55	48	0	0	51	1.00
976163--976244	31	3.1	25	72	23	69	41	2	0	56	1.13
976194--976250	21	2.6	22	80	5	62	40	1	0	57	1.09
976650--976688	20	2.0	20	89	0	60	58	0	0	41	0.98
978024--978066	22	2.0	22	81	9	52	41	0	0	58	0.98
978065--978106	22	1.9	22	85	9	59	52	0	0	47	1.00
978074--978166	22	4.3	20	69	19	62	39	0	0	60	0.97
978332--978459	20	6.2	20	69	21	68	40	0	1	57	1.14
978386--978458	37	1.9	39	84	15	100	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
979159--979205	16	2.9	16	87	3	58	38	0	0	61	0.96
979241--979291	16	2.9	17	74	25	52	54	0	0	45	0.99
979344--979406	5	12.8	5	74	15	60	65	0	0	34	0.93
979342--979404	9	6.3	11	74	20	66	65	0	0	34	0.93
979344--979413	20	3.5	20	78	11	81	64	0	0	35	0.94
979344--979413	11	6.5	11	72	25	53	64	0	0	35	0.94
979961--979993	3	11.0	3	100	0	66	33	0	0	66	0.92
981104--981172	28	2.3	31	73	9	72	59	0	0	40	0.97
981122--981185	24	2.8	24	79	9	64	53	0	0	46	1.00
981977--982075	33	3.1	32	76	13	98	53	2	1	43	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13