genome.fa.s163.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold163
Parameters: 2 7 7 80 10 50 1000
Length:  1788591

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  5  of  13  ( 1505 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446123--446153	2	15.5	2	100	0	62	48	0	0	51	1.00
447015--447053	19	2.0	20	90	5	62	35	2	7	53	1.43
447508--447551	13	3.5	13	87	3	63	43	0	0	56	0.99
447513--447555	18	2.4	18	92	7	70	44	0	0	55	0.99
447494--447570	20	3.8	20	72	20	54	46	1	1	50	1.17
447893--447926	2	17.0	2	100	0	68	50	0	0	50	1.00
447963--448002	16	2.4	17	83	8	55	70	7	2	20	1.24
447985--448044	29	2.0	30	81	15	72	60	8	1	30	1.36
448575--448604	2	15.0	2	100	0	60	50	0	0	50	1.00
449016--449047	2	16.5	2	93	6	57	46	0	0	53	1.00
449765--449794	2	15.0	2	92	0	51	50	3	0	46	1.18
456864--456946	36	2.3	37	77	4	89	46	0	0	53	1.00
457286--457344	21	2.9	21	77	10	68	28	1	0	69	0.98
457871--457928	21	2.7	22	77	20	68	56	0	0	43	0.99
457860--457979	51	2.4	50	76	18	124	53	1	0	44	1.16
457969--458034	13	5.5	12	71	18	57	54	0	0	45	0.99
457970--458067	39	2.5	39	87	9	130	53	1	0	45	1.07
458196--458267	27	2.8	26	75	23	73	34	0	1	63	1.03
458203--458262	23	2.7	22	82	14	70	35	0	0	65	0.93
458203--458267	26	2.7	25	84	13	75	35	0	0	64	0.94
459096--459206	8	13.5	8	69	13	57	37	1	1	58	1.19
459096--459159	20	3.2	20	72	14	60	42	1	1	54	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459089--459179	34	2.7	34	85	6	116	42	1	2	53	1.20
459119--459207	19	5.0	19	70	20	52	37	1	2	59	1.17
459184--459282	42	2.3	43	83	10	114	42	0	0	57	0.98
459251--459280	15	1.9	15	93	6	51	40	0	0	60	0.97
460094--460136	17	2.6	16	77	7	50	32	2	2	62	1.20
462164--462212	24	2.0	24	100	0	98	32	8	24	34	1.85
466019--466144	67	1.9	67	90	6	202	48	0	0	51	1.00
466022--466167	67	2.2	66	83	11	174	51	0	0	48	1.00
466590--466670	23	3.5	23	75	9	83	58	2	1	38	1.20
466654--466705	26	2.1	24	85	7	68	61	0	0	38	0.96
467171--467217	24	2.0	24	87	8	69	61	0	4	34	1.15
467270--467321	16	3.1	17	73	18	54	59	0	0	40	0.97
467271--467324	18	3.1	18	75	17	60	57	0	0	42	0.98
467583--467632	17	2.9	17	85	5	57	62	0	2	36	1.07
472417--472477	19	3.1	20	75	17	65	39	0	4	55	1.21
472436--472481	15	3.1	15	84	3	58	41	0	2	56	1.11
475201--475276	37	2.0	38	82	5	91	30	2	10	56	1.47
476255--476306	21	2.5	21	90	0	77	55	0	1	42	1.10
476344--476407	33	1.9	34	90	3	103	46	0	1	51	1.10
477685--477731	16	3.0	16	81	6	51	29	4	0	65	1.11
479767--479797	2	15.5	2	100	0	62	51	0	0	48	1.00
479789--479830	15	2.8	16	86	13	54	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480500--480535	18	2.1	19	85	15	51	61	0	0	38	0.96
482345--482385	21	2.0	21	90	4	66	53	0	0	46	1.00
482427--482456	15	2.0	15	93	0	51	53	10	6	30	1.60
482590--482635	15	3.1	15	75	15	51	56	0	0	43	0.99
516405--516449	22	2.0	22	84	16	58	37	0	4	57	1.19
516818--516862	21	2.1	21	87	0	63	68	0	2	28	1.01
517583--517622	18	2.2	18	90	0	62	62	0	0	37	0.95
517527--517616	44	2.0	44	80	4	101	52	0	0	47	1.00
517580--517642	15	3.9	16	82	12	60	60	0	0	39	0.97
517608--517706	26	3.8	26	66	24	64	55	1	0	43	1.06
517548--517651	15	6.6	16	66	15	56	54	0	0	45	0.99
517631--517706	26	3.2	23	75	19	66	57	1	0	40	1.07
518246--518303	22	2.6	22	81	10	64	36	0	0	63	0.94
518546--518638	15	6.4	14	72	16	57	45	0	3	51	1.17
518574--518650	40	1.9	41	89	7	122	46	0	0	53	1.00
518644--518674	15	2.1	14	94	5	53	29	0	0	70	0.87
521771--521869	52	1.9	52	84	12	132	42	0	1	56	1.06
523444--523483	20	2.1	20	86	9	57	35	0	5	60	1.19
523700--523741	13	3.4	13	78	21	54	61	0	0	38	0.96
523720--523758	20	2.0	20	89	0	60	53	0	2	43	1.14
523718--523766	20	2.4	20	75	3	53	57	0	2	40	1.10
524131--524177	19	2.6	18	74	9	51	59	0	2	38	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
524626--524676	20	2.5	20	84	6	59	37	0	1	60	1.08
525120--525225	52	2.0	53	92	1	178	45	15	5	33	1.69
531209--531233	13	1.9	13	100	0	50	92	0	8	0	0.40
533095--533131	11	3.3	11	92	3	56	67	8	2	21	1.29
533499--533572	35	2.2	33	83	9	87	56	2	1	39	1.22
533858--533944	31	2.7	33	85	8	126	41	1	0	57	1.06
533876--533925	14	3.4	14	74	15	55	46	0	0	54	1.00
535790--535829	18	2.2	18	86	8	55	42	0	0	57	0.98
536180--536212	13	2.8	12	90	9	50	12	6	9	72	1.26
537600--537643	13	3.3	13	84	12	54	45	0	4	50	1.22
544050--544106	18	3.3	18	76	9	57	35	0	0	64	0.93
544049--544087	14	2.8	14	88	11	62	33	0	0	66	0.92
544080--544129	21	2.5	21	78	15	61	44	0	0	56	0.99
545674--545742	33	2.1	34	86	8	97	56	0	0	43	0.99
546318--546360	23	1.9	22	85	4	59	44	0	4	51	1.22
546322--546368	23	2.0	23	83	0	58	44	2	4	48	1.34
546355--546388	18	1.9	18	88	5	52	44	5	0	50	1.26
547606--547645	20	2.0	21	90	5	64	55	2	2	40	1.27
547793--547868	35	2.2	34	83	9	91	30	3	2	63	1.26
548137--548178	20	2.0	21	86	4	59	50	2	0	47	1.14
548959--549038	31	2.8	27	76	20	90	52	1	1	45	1.16
548980--549031	16	3.3	16	73	21	56	53	1	0	44	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
550095--550133	13	3.2	13	89	7	55	69	0	0	30	0.89
550172--550250	37	2.1	37	88	0	113	43	25	5	26	1.75
550434--550463	12	2.5	12	88	0	51	66	0	0	33	0.92
551243--551304	32	2.0	31	81	9	72	48	0	0	51	1.00
553275--553326	27	2.0	26	85	11	70	26	5	0	67	1.13
553697--553754	24	2.5	24	88	2	82	32	5	5	56	1.43
554625--554651	14	1.9	14	100	0	54	66	0	3	29	1.09
554641--554710	26	2.7	25	70	14	70	62	0	0	37	0.95
560224--560298	32	2.3	33	82	11	93	42	1	1	54	1.17
560251--560303	22	2.5	21	80	17	65	43	0	0	56	0.99
560276--560325	16	2.9	18	75	24	63	38	0	2	60	1.09
560259--560331	22	3.1	25	80	17	70	41	0	1	57	1.07
560901--560954	13	4.1	14	79	13	62	55	0	0	44	0.99
560901--560955	14	4.0	15	76	23	59	56	0	0	43	0.99
560906--560959	25	2.1	27	86	6	76	62	0	0	37	0.95
572994--573093	51	2.0	50	96	2	182	46	6	8	40	1.58
573272--573308	3	12.3	3	100	0	74	32	0	0	67	0.91
573956--573991	15	2.6	13	84	16	54	55	0	0	44	0.99
573958--573988	15	2.1	15	100	0	62	51	0	0	48	1.00
575499--575595	29	3.3	30	79	12	103	50	2	5	42	1.36
575818--575848	3	10.3	3	100	0	62	67	0	0	32	0.91
578222--578294	20	3.6	20	72	17	60	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
578385--578501	5	23.6	5	66	20	50	41	0	0	58	1.04
578385--578505	11	10.7	11	71	21	65	40	0	0	58	1.04
578375--578506	26	5.0	27	69	21	86	43	0	0	56	1.04
578377--578441	20	3.2	20	77	12	60	44	1	0	53	1.09
578381--578499	46	2.6	47	75	15	124	41	0	0	57	1.04
578419--578497	16	4.9	17	72	17	62	44	0	0	55	0.99
578469--578510	22	1.9	22	85	9	59	28	0	0	71	0.86
578385--578503	48	2.6	46	74	10	118	40	0	0	58	1.04
578470--578514	17	2.7	17	83	10	58	28	0	0	71	0.87
579382--579434	27	1.9	28	84	3	72	52	0	0	47	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13