genome.fa.s163.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold163
Parameters: 2 7 7 80 10 50 1000
Length:  1788591

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  4  of  13  ( 1505 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327702--327731	2	15.0	2	100	0	60	50	0	0	50	1.00
327965--328007	20	2.2	19	84	16	52	58	0	4	37	1.19
328197--328267	33	2.1	33	87	7	99	38	14	7	40	1.73
328446--328472	13	2.1	13	100	0	54	59	0	0	40	0.98
328487--328532	22	2.1	22	84	8	58	63	2	2	32	1.19
330059--330101	22	2.0	22	86	8	63	51	2	0	46	1.13
332135--332164	15	2.0	15	93	0	51	53	0	3	43	1.17
332908--333003	40	2.4	39	82	5	102	65	11	5	17	1.42
333016--333088	32	2.3	32	80	7	94	56	2	0	41	1.14
333033--333085	16	3.3	16	77	15	56	56	0	0	43	0.99
333503--333541	21	1.9	21	89	5	62	48	0	2	48	1.15
333910--333994	35	2.4	36	82	11	104	55	0	0	44	0.99
334213--334360	8	17.9	8	65	23	58	43	0	0	55	1.09
334253--334361	20	5.3	21	69	23	72	44	0	0	55	0.99
334253--334328	25	3.3	23	74	18	68	43	0	0	56	0.99
334280--334372	33	2.8	33	85	8	127	44	0	0	55	0.99
334246--334365	18	6.9	17	69	20	63	45	0	0	55	0.99
335072--335133	11	5.4	11	74	11	52	38	0	0	61	0.96
335137--335245	32	3.4	31	75	12	105	41	2	0	55	1.21
335095--335259	64	2.5	66	78	13	178	39	2	0	57	1.16
335267--335300	17	1.9	18	88	5	52	47	0	0	52	1.00
335268--335321	24	2.2	25	78	15	60	46	0	1	51	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336285--336334	19	2.6	19	77	3	55	40	0	0	60	0.97
336323--336369	21	2.2	21	77	7	51	53	0	0	46	1.00
336831--336860	13	2.4	13	94	5	53	53	0	0	46	1.00
336831--336860	6	4.8	6	92	8	51	53	0	0	46	1.00
338309--338347	21	1.9	20	94	5	69	35	20	12	30	1.90
338308--338358	21	2.5	20	78	9	57	33	21	17	27	1.96
341845--341896	22	2.4	22	96	0	95	38	32	3	25	1.74
341867--341966	37	2.9	34	81	8	137	41	30	2	27	1.67
347043--347169	66	1.9	66	95	0	227	38	14	9	37	1.79
347236--347288	3	17.7	3	100	0	106	32	0	0	67	0.91
347425--347456	16	2.0	16	93	0	55	40	0	0	59	0.97
349489--349517	2	14.5	2	100	0	58	48	0	0	51	1.00
350063--350088	2	13.0	2	100	0	52	50	0	0	50	1.00
350108--350157	24	2.1	24	96	0	91	42	6	30	22	1.77
352108--352437	171	1.9	168	88	1	498	39	14	16	29	1.89
354481--354541	2	31.0	2	90	3	97	49	3	0	47	1.18
354896--354952	14	3.9	14	73	13	53	43	0	0	56	0.99
354894--354957	22	2.9	23	77	11	71	42	0	0	57	0.98
356205--356237	3	11.0	3	100	0	66	33	0	0	66	0.92
356458--356517	30	2.0	30	96	0	111	45	1	0	53	1.10
356464--356515	14	3.6	14	77	10	59	44	0	0	55	0.99
357239--357279	21	2.0	21	85	0	55	46	2	0	51	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357238--357358	56	2.2	55	81	14	142	40	0	0	58	1.04
358798--358824	7	3.9	7	100	0	54	55	0	0	44	0.99
358798--358869	7	12.0	6	81	10	53	48	0	0	51	1.00
358811--358889	26	3.0	26	76	10	65	43	0	1	55	1.07
359296--359364	19	3.8	17	76	14	59	28	1	2	66	1.14
361119--361182	25	2.6	23	76	13	65	43	0	0	56	0.99
361113--361165	27	2.0	27	85	7	72	49	0	0	50	1.00
361506--361548	17	2.4	18	80	3	52	37	0	2	60	1.10
361955--361987	2	16.5	2	100	0	66	51	0	48	0	1.00
362763--362840	38	2.1	38	82	4	95	52	0	1	46	1.08
363793--363841	18	2.8	18	84	9	57	61	0	0	38	0.96
363803--363846	18	2.4	18	85	7	54	59	0	0	40	0.98
363794--363842	25	1.9	26	91	4	82	59	0	0	40	0.98
365103--365140	19	2.0	20	89	5	60	28	0	0	71	0.87
369382--369419	13	2.7	14	84	12	51	50	0	0	50	1.00
369363--369430	33	2.0	34	82	2	84	54	0	0	45	0.99
369542--369586	20	2.2	21	88	4	65	66	2	0	31	1.04
369566--369632	29	2.4	26	81	16	73	52	5	0	41	1.26
373362--373453	41	2.2	43	77	11	102	48	1	0	50	1.08
374041--374080	19	1.9	19	85	14	53	65	0	2	32	1.06
374023--374074	19	2.6	19	77	22	54	65	0	1	32	1.04
374036--374100	28	2.6	24	79	15	69	63	0	1	35	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374023--374126	18	5.3	19	72	20	63	60	0	0	38	1.03
374064--374126	32	1.9	33	90	3	101	58	0	0	41	0.98
375782--375825	2	22.0	2	100	0	88	50	0	0	50	1.00
379176--379209	11	3.0	11	86	4	50	35	0	0	64	0.94
379290--379333	20	2.1	21	83	4	54	63	0	2	34	1.07
379300--379338	20	2.0	20	90	10	62	58	0	0	41	0.98
380284--380319	3	12.0	3	100	0	72	66	0	0	33	0.92
380460--380486	14	1.9	14	100	0	54	55	0	0	44	0.99
380441--380538	27	3.7	26	72	16	85	39	0	0	60	0.97
380487--380539	11	4.4	11	76	21	52	32	0	0	67	0.91
380487--380539	16	3.2	16	78	10	63	32	0	0	67	0.91
389290--389393	52	2.0	52	94	0	181	16	22	30	30	1.95
392463--392523	7	8.8	6	81	18	50	44	0	0	55	0.99
392456--392517	14	4.4	14	82	15	74	45	0	0	54	0.99
392471--392516	22	2.1	22	95	0	83	41	0	0	58	0.98
392452--392526	29	2.6	29	85	10	100	42	0	0	57	0.98
396420--396468	22	2.3	22	79	10	57	59	0	0	40	0.98
396756--396803	14	3.5	14	81	18	57	39	0	0	60	0.97
396776--396826	22	2.3	22	83	6	68	47	0	0	52	1.00
396858--396928	24	3.0	24	83	6	83	56	2	1	39	1.23
397476--397544	32	2.1	33	89	5	104	42	0	1	56	1.08
397491--397545	17	3.3	17	74	20	62	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
397829--397859	14	2.2	14	94	0	53	70	0	0	29	0.87
399139--399176	19	2.0	20	94	5	69	47	0	0	52	1.00
399195--399221	14	1.9	14	100	0	54	40	7	7	44	1.60
400253--400300	18	2.8	17	85	14	64	4	35	12	47	1.60
401983--402022	10	4.0	10	81	12	55	37	0	0	62	0.95
401983--402036	20	2.7	20	83	11	58	38	1	0	59	1.08
402290--402329	14	2.7	15	88	7	64	72	0	0	27	0.85
402333--402385	14	3.5	14	74	18	52	47	1	0	50	1.12
402323--402403	32	2.5	31	76	7	81	51	2	0	45	1.14
402289--402412	16	7.2	17	67	24	66	58	1	0	40	1.08
402684--402717	16	2.2	16	89	5	52	32	0	2	64	1.08
405420--405474	26	2.2	26	90	3	85	34	3	0	61	1.13
408313--408350	2	19.0	2	100	0	76	50	0	0	50	1.00
410250--410317	15	4.9	15	71	20	58	45	2	0	51	1.16
411057--411101	14	3.1	15	87	6	58	33	0	0	66	0.92
413538--413855	159	2.0	159	100	0	636	35	11	16	36	1.85
421977--422044	2	34.0	2	93	0	118	1	1	48	48	1.19
423262--423296	2	17.5	2	100	0	70	0	0	51	48	1.00
424275--424306	4	8.0	4	100	0	64	25	0	0	75	0.81
426254--426280	13	2.1	13	100	0	54	40	7	14	37	1.74
429542--429795	50	5.2	50	85	6	324	31	20	18	30	1.96
429542--429792	95	2.6	98	87	4	339	31	19	17	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434131--434339	50	4.2	50	90	2	312	29	18	21	31	1.96
440200--440275	32	2.4	31	72	10	73	53	1	14	30	1.49
440718--440800	25	3.4	25	77	12	75	38	2	0	59	1.11
440750--440814	23	3.0	22	79	18	66	43	0	0	56	0.99
440846--440905	26	2.3	26	83	11	70	55	11	3	30	1.52
440915--440951	2	18.5	2	100	0	74	51	0	0	48	1.00
441761--441800	21	1.9	21	90	10	64	37	0	0	62	0.95
443920--443985	30	2.2	30	81	10	73	39	6	13	40	1.69
444838--444879	21	2.0	21	86	13	61	40	0	0	59	0.97
445640--445679	12	3.5	12	90	10	66	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13