genome.fa.s170.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold170
Parameters: 2 7 7 80 10 50 1000
Length:  1632119

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1308 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1511460--1511492	2	16.5	2	93	0	57	48	3	0	48	1.17
1512232--1512280	3	16.3	3	100	0	98	32	0	0	67	0.91
1512513--1512566	28	1.9	28	85	7	74	18	16	20	44	1.87
1515765--1515800	5	7.2	5	93	0	63	55	0	0	44	0.99
1515729--1515799	37	1.9	37	82	5	90	54	0	0	45	0.99
1515801--1515838	16	2.4	16	86	8	51	31	5	5	57	1.43
1516388--1516591	50	4.2	50	88	6	319	28	21	19	31	1.97
1520980--1521288	50	6.2	50	90	1	467	30	20	18	31	1.96
1522460--1522514	17	3.4	16	78	12	58	40	0	0	60	0.97
1522466--1522522	16	3.4	17	80	7	71	42	0	0	57	0.98
1523233--1523262	12	2.5	12	94	0	51	43	0	0	56	0.99
1526903--1526943	16	2.6	16	81	11	50	43	0	0	56	0.99
1526884--1526958	37	2.0	38	89	2	116	45	0	0	54	0.99
1526885--1526970	38	2.3	37	85	2	109	41	1	1	55	1.14
1527796--1527830	19	1.9	19	88	11	56	51	0	0	48	1.00
1528033--1528068	3	12.0	3	100	0	72	33	0	0	66	0.92
1530308--1530338	15	2.1	15	100	0	62	19	19	35	25	1.95
1533699--1533871	78	2.2	78	90	4	269	56	8	10	24	1.61
1535110--1535150	21	1.9	22	90	5	66	26	2	4	65	1.25
1536877--1537192	158	2.0	158	89	0	479	32	18	10	37	1.86
1542580--1542621	20	2.2	19	86	4	57	42	2	2	52	1.27
1542621--1542696	20	3.8	20	66	17	50	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1543283--1543333	15	3.4	15	86	0	66	41	1	1	54	1.22
1543283--1543383	5	21.2	5	69	23	58	41	0	0	56	1.12
1545341--1545395	23	2.4	23	80	14	69	67	1	1	29	1.11
1545341--1545398	24	2.5	23	76	15	66	65	1	1	31	1.13
1545483--1545527	17	2.7	16	86	6	54	37	0	0	62	0.96
1545514--1545551	15	2.5	15	83	8	51	50	2	0	47	1.15
1548374--1548883	254	2.0	252	96	1	950	35	9	17	36	1.83
1552954--1553041	15	5.7	15	74	10	88	54	0	0	45	0.99
1552998--1553037	17	2.3	17	86	4	53	57	0	0	42	0.98
1552954--1553042	32	2.8	32	85	9	105	55	0	0	44	0.99
1552994--1553043	26	1.9	26	84	8	66	58	0	0	42	0.98
1559054--1559127	20	3.6	20	79	13	78	32	17	10	39	1.84
1565761--1565790	8	3.8	8	90	0	51	50	6	0	43	1.28
1566094--1566209	33	3.7	31	72	19	89	58	1	0	39	1.08
1566108--1566169	19	3.5	19	68	31	57	59	0	0	40	0.97
1566094--1566180	35	2.5	36	82	17	112	58	0	0	41	0.98
1566097--1566206	5	21.6	5	69	22	52	57	1	0	40	1.09
1566132--1566193	29	2.0	31	84	9	83	54	3	0	41	1.16
1566482--1566522	2	21.0	2	85	5	57	51	0	0	48	1.00
1566482--1566527	15	3.1	15	90	3	58	50	0	0	50	1.00
1566941--1567020	41	2.0	41	80	14	94	36	0	5	58	1.20
1567094--1567191	15	6.4	15	73	13	67	60	1	2	36	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1567143--1567190	16	3.1	16	85	5	64	68	0	2	29	1.01
1567240--1567285	22	2.1	22	84	8	58	60	4	0	34	1.16
1567263--1567315	27	1.9	28	84	3	72	56	3	0	39	1.17
1568127--1568167	17	2.4	18	80	12	50	51	0	0	48	1.00
1568636--1568687	23	2.3	23	80	6	61	26	1	0	71	0.97
1568629--1568679	12	4.2	12	72	7	50	29	1	0	68	1.00
1569101--1569128	4	7.0	4	100	0	56	25	0	0	75	0.81
1570885--1570909	13	1.9	13	100	0	50	12	0	0	88	0.53
1572404--1572434	12	2.6	12	89	0	53	12	32	0	54	1.38
1572698--1572811	10	11.4	10	70	10	63	34	24	9	31	1.88
1572697--1572813	20	5.8	20	71	4	101	34	24	9	31	1.87
1572679--1572805	40	3.2	40	84	4	159	32	25	9	33	1.88
1576802--1576840	12	3.2	12	92	3	60	12	28	0	58	1.34
1577097--1577163	20	3.3	20	72	0	71	32	22	10	34	1.88
1577085--1577189	40	2.6	40	87	0	138	30	26	7	35	1.84
1577077--1577201	40	3.1	40	81	4	110	31	25	8	34	1.87
1577176--1577214	20	2.0	20	94	0	69	43	17	7	30	1.77
1577488--1577556	30	2.3	29	82	9	77	43	0	1	55	1.08
1577488--1577556	29	2.3	30	82	9	79	43	0	1	55	1.08
1580273--1580317	23	2.0	23	86	0	63	62	0	4	33	1.15
1580273--1580314	21	1.9	22	85	9	59	61	0	4	33	1.17
1580266--1580349	12	7.3	12	70	17	63	63	0	2	34	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1580286--1580350	31	2.1	32	91	2	105	67	0	0	32	0.91
1580298--1580346	11	4.6	11	75	17	50	65	0	0	34	0.93
1580304--1580368	19	3.4	18	79	10	67	63	0	0	36	0.95
1580340--1580428	18	4.6	18	71	16	63	56	1	0	42	1.06
1580304--1580372	9	7.3	9	72	18	52	62	0	0	37	0.96
1581499--1581524	3	8.7	3	100	0	52	69	0	0	30	0.89
1582815--1582862	22	2.1	23	85	11	64	39	0	0	60	0.97
1587390--1587477	10	8.7	10	70	16	65	43	0	0	56	0.99
1587420--1587511	33	2.8	33	79	14	100	42	1	1	55	1.14
1587996--1588050	11	5.1	11	76	10	51	61	0	0	38	0.96
1588183--1588209	13	2.1	13	100	0	54	59	7	0	33	1.25
1588476--1588579	50	2.1	50	98	0	199	37	19	13	29	1.90
1590941--1590965	12	2.1	12	100	0	50	76	8	8	8	1.18
1594078--1594114	9	4.1	9	89	10	58	0	0	10	89	0.49
1594078--1594114	17	2.2	17	90	0	56	0	0	10	89	0.49
1599443--1599492	2	25.0	2	100	0	100	50	0	0	50	1.00
1599829--1599868	20	2.1	19	85	4	53	40	5	0	55	1.22
1600300--1600464	80	2.0	81	86	3	226	35	6	3	54	1.44
1600665--1600725	32	1.9	31	90	3	95	40	16	4	37	1.70
1607198--1607249	18	2.8	18	71	11	52	36	3	0	59	1.16
1607410--1607445	15	2.2	17	90	9	58	50	0	2	47	1.15
1607753--1607794	16	2.7	15	82	10	57	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1608125--1608163	16	2.4	16	86	4	51	43	0	0	56	0.99
1608508--1608537	15	2.0	15	93	0	51	50	3	0	46	1.18
1610308--1610624	48	6.5	48	80	5	278	29	35	18	16	1.93
1610308--1610624	99	3.2	98	85	7	419	29	35	18	16	1.93
1610854--1610967	33	3.5	33	83	7	133	22	33	28	14	1.94
1613738--1613785	1	48.0	1	93	0	69	93	0	2	4	0.39
1613735--1613787	18	3.1	18	86	13	85	84	0	3	11	0.73
1613790--1613846	21	2.7	21	97	0	105	33	10	19	36	1.86
1613902--1613969	19	3.9	19	78	21	85	35	11	14	38	1.83
1613923--1613947	13	1.9	13	100	0	50	36	16	16	32	1.90
1613904--1613966	32	2.0	32	96	0	117	34	12	15	36	1.86
1614009--1614034	13	2.0	13	100	0	52	30	15	15	38	1.88
1613989--1614055	33	2.0	33	88	0	98	25	14	16	43	1.86
1616503--1616884	52	7.3	52	71	15	261	28	25	13	32	1.93
1616503--1616883	104	3.6	103	75	15	402	28	25	13	33	1.93
1616656--1616728	28	2.6	30	87	8	100	24	30	19	26	1.98
1616388--1616951	212	2.6	212	96	1	1004	27	26	14	31	1.94
1616868--1616944	28	2.8	28	87	0	100	23	33	19	23	1.97
1629485--1629559	1	75.0	1	81	0	87	90	4	5	0	0.54
1630553--1631681	53	21.1	54	90	7	1688	28	29	20	20	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!